The above code runs for 1 iteration and then gives the following error:
6 errors detected in the compilation of "cupy_jitify_exercise".
RuntimeError Traceback (most recent call last)
Cell In[80], line 3
1 CUPY_DUMP_CUDA_SOURCE_ON_ERROR =1
2 CUPY_DISABLE_JITIFY_CACHE = 1
----> 3 model.fit(min_iter=30, max_iter=35)
4 model.plot_convergence()
File ~/anaconda3/envs/scenvi/lib/python3.9/site-packages/SEACells/core.py:587, in SEACells.fit(self, max_iter, min_iter, initial_archetypes)
585 if max_iter < min_iter:
586 raise ValueError("The maximum number of iterations specified is lower than the minimum number of iterations specified.")
--> 587 self._fit(max_iter=max_iter, min_iter=min_iter, initial_archetypes=initial_archetypes, initial_assignments=None)
File ~/anaconda3/envs/scenvi/lib/python3.9/site-packages/SEACells/core.py:544, in SEACells._fit(self, max_iter, min_iter, initial_archetypes, initial_assignments)
532 def _fit(self, max_iter: int = 50, min_iter:int=10, initial_archetypes=None, initial_assignments=None):
533 """
534 Compute archetypes and loadings given kernel matrix K. Iteratively updates A and B matrices until maximum
535 number of iterations or convergence has been achieved.
(...)
542
543 """
--> 544 self.initialize(initial_archetypes=initial_archetypes, initial_assignments=initial_assignments)
546 converged = False
547 n_iter = 0
...
File cupy/cuda/jitify.pyx:192, in cupy.cuda.jitify._init_cupy_headers_from_scratch()
File cupy/cuda/jitify.pyx:264, in cupy.cuda.jitify.jitify()
RuntimeError: Runtime compilation failed
I have tried multiple things and have even tried rebuilding my anaconda venv, but unable to fix this, it would be really helpful if someone could help with the same.
I am facing some cupy cuda error while running the following code:
The above code runs for 1 iteration and then gives the following error:
I have tried multiple things and have even tried rebuilding my anaconda venv, but unable to fix this, it would be really helpful if someone could help with the same.