run adata.uns['SPECTRA_overlap'].index, and there are some factors without name?

dpeerlab / spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

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run adata.uns['SPECTRA_overlap'].index, and there are some factors without name? #46

Open Joyjoyjoyc opened 2 months ago

Joyjoyjoyc commented 2 months ago

Hi, everyone! As I follow the tutorial of spectra to fit model without cell type annotations after 10000 epochs, and run adata.uns['SPECTRA_overlap'].index, I got some factor without name as follow. I want to know why? Thanks!

微信图片_20240518100300

Joyjoyjoyc commented 2 months ago

And there are also some duplicate factor names, like the factor 81 and factor 87 are both pentose-phosphate-pathway, but the umap plot looks quite different.