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dpique / aneuvis

Web-based visualization of aneuploidy in single cells
https://dpique.shinyapps.io/aneuvis/
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plotting sky data #1

Open dpique opened 6 years ago

dpique commented 6 years ago

One exciting feature would be to generate plots for individual cells (karyogram) from the SKY data (see below).

ftp://ftp.ncbi.nlm.nih.gov/sky-cgh/DATA/SKY-images/A_Schaeffer_Tm12_E6__E6_E7TTL__karyotype_100.gif sky scheme

It'd also be nice to find a way to display and summarize chromosomal break data. This is because there may be patterns in chromosomal breaks (eg certain sets of chromosomes tend to break together in the same cell) that could be more easily noticed if visualized.

dpique commented 6 years ago

Generate summary stats and plots that summarize chromosome-level aneuploidy within a class. This would be a more fine-grained version of what we have now, which are summaries at the class level.