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dpryan79
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ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
MIT License
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Unrecognized VM option 'AggressiveOpts'
#33
chiefcat
closed
1 year ago
1
Add mRatBN7.2
#32
vejnar
closed
2 years ago
1
Add GRCm39
#31
vejnar
closed
3 years ago
1
License for Files
#30
Kekananen
closed
3 years ago
3
Update Ensembl BDGP6
#29
vejnar
closed
4 years ago
1
CanFam3
#28
lindenb
closed
4 years ago
1
Add missing tab (for cvbio compatibility)
#27
BrunoGrandePhD
closed
4 years ago
1
add galGal6ensembl2NCBI
#26
LehmannN
closed
4 years ago
1
Merge pull request #25 from LehmannN/master
#25
LehmannN
closed
4 years ago
1
Mention the cvbio tool UpdateContigNames in the README
#24
clintval
closed
4 years ago
1
Add GRCh38 refseq->ucsc mapping
#23
cmdcolin
closed
5 years ago
1
Contigs missing
#22
mikecormier
opened
5 years ago
8
Add Xenopus laevis and tropicalis. Rename rat assembly.
#21
vejnar
closed
6 years ago
1
Add RN6 ensembl2UCSC chromosome mappings
#20
JenkoB
closed
6 years ago
1
Add zebrafish GRCz11
#19
vejnar
closed
6 years ago
1
GRCh38: add gencode found in ensembl inputs
#18
chapmanb
closed
6 years ago
1
Mention replace_chromosome_names Galaxy tool
#17
nsoranzo
closed
7 years ago
1
Some patch mappings are wrong
#16
dpryan79
closed
7 years ago
2
Add script to replace chromosome names in tabular files
#15
nsoranzo
closed
7 years ago
4
Add GRCh38_NCBI2ensembl.txt
#14
nsoranzo
closed
7 years ago
2
Update GRCh38 and GRCm38 mappings
#13
dpryan79
closed
7 years ago
0
UCSC<->ensembl for the galGal4 chicken genome.
#12
iljungr
closed
8 years ago
1
How to upload galGal4 mappings
#11
iljungr
closed
8 years ago
1
Source of thr tables?
#10
mrivas
closed
8 years ago
3
Updates
#9
dpryan79
closed
8 years ago
0
Mouse/human mappings need to be updated
#8
dpryan79
closed
8 years ago
1
Could you explain how to generate?
#7
lmmx
closed
8 years ago
6
Let's integrate this into deeptools!
#6
bgruening
closed
8 years ago
5
Adding yeast, medaka and Xenopus
#5
vejnar
closed
9 years ago
1
Renaming GRCz10 and adding Ensembl
#4
vejnar
closed
9 years ago
1
Rename GRCZ10 -> GRCz10
#3
vejnar
closed
9 years ago
0
all chromosomes from GRCh37, moved chrM after chrX because it's the orde...
#2
lindenb
closed
9 years ago
0
Update README.md
#1
RamRS
closed
9 years ago
2