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dpryan79 / SE-MEI

Tools for finding mobile element insertions from single-end datasets
GNU General Public License v2.0
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Is it possible to obtain unaligned bases at the end of reads? #5

Open dineshkumarsrk opened 5 years ago

dineshkumarsrk commented 5 years ago

Your tool extracting the repeated overlapping reads perfectly. But, I need to get the overlapping extended reads which is not there in the reference sequences (please see the picture). is it possible to get the same. Screenshot from 2019-09-25 14-01-42

dpryan79 commented 5 years ago

As I implied on biostars, this tool should only be outputting the unmapped portion.