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dpryan79 / SE-MEI

Tools for finding mobile element insertions from single-end datasets
GNU General Public License v2.0
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extract no soft-clipped region #6

Closed cascoamarillo closed 1 year ago

cascoamarillo commented 1 year ago

Nice tool. But how would you do to: -extract the read region that is not sotf-clipped? -extract the entire (original) read?

Thanks

dpryan79 commented 1 year ago

The tool isn't designed to do that, the code would have to be changed.

cascoamarillo commented 1 year ago

Thanks for the quick reply. Yes, I understand. I'll try to look at the code from extractSoftclipped. I was thinking that along with the extracted clipped read regions (=TEs), what if I would like to look at the different insertion points (=non-clipped read regions) in the genome (preference insertion points?), and if it could be done all together here. Thank you.