dpryan79 / SE-MEI

Tools for finding mobile element insertions from single-end datasets
GNU General Public License v2.0
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Paired end data #7

Open PaolaBenaglio opened 1 year ago

PaolaBenaglio commented 1 year ago

Hi Thank you for the tool! I am looking for a way to extract soft-clipped reads from human WGS mapping with paired end reads. Your tool here extractSoftclipped does something very close to what I need, with the difference that I need also the paired read (even if one is not soft-clipped), and the name of the read too. My goal is to run an insertion site analysis but the tool I am using is very slow for WGS and I want to input only pre-filter soft-clipped reads. Thank you very much for any help you can give! Paola