dptech-corp / Uni-Dock

Uni-Dock: a GPU-accelerated molecular docking program
188 stars 40 forks source link

Request for Detailed Explanation on Biased Docking #39

Open rkakamilan opened 1 year ago

rkakamilan commented 1 year ago

Hi Uni-Dock team.

I am intrigued by the biased docking methodology described in the original manuscript. However, I find only one simple usage in the README.

https://github.com/dptech-corp/Uni-Dock/blob/7c0cda06c94fc802194c55e7cec0cef1f834c31a/unidock_tools/README.md?plain=1#L51-L53

Could you please elaborate more on the biased docking? Specifically, I am interested in understanding how one can set a hydrogen bond bias, as exemplified in the manuscript's case study on tankyrase2.

The inclusion of a practical example would be incredibly helpful. Thanks.