dputhier / libgtftk

gtftk C Library and program
GNU General Public License v3.0
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convert_ensembl gives erratic results #65

Closed dputhier closed 6 years ago

dputhier commented 6 years ago

When checking checksum with md5, the result of convert_ensembl differs from one time to another:

  $ gtftk get_example | awk '$3 != "transcript"' | awk '$3 != "gene"' | gtftk convert_ensembl  | md5sum-lite | sed 's/ .*//'
  69d25cd2aa1fcb7afb426c853e2d63e1
  $ gtftk get_example | awk '$3 != "transcript"' | awk '$3 != "gene"' | gtftk convert_ensembl  | md5sum-lite | sed 's/ .*//'
  5dd54b496fae898908da36eae0fdd5f1
  $ gtftk get_example | awk '$3 != "transcript"' | awk '$3 != "gene"' | gtftk convert_ensembl  | md5sum-lite | sed 's/ .*//'
  c2836744252aa6a8f1cfd39cdb540791
dputhier commented 6 years ago

fixed in 2714b90bfb90a15c74c6bf0012b4097e0ac99582