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dputhier / libgtftk

gtftk C Library and program
GNU General Public License v3.0
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Convert_ensembl #67

Closed dputhier closed 6 years ago

dputhier commented 6 years ago

Coming back with convert_ensembl :).

    gtftk short_long -C -l -V 2 -i Homo_sapiens.GRCh38.91.chr.gtf.gz | gtftk convert_ensembl -V 2
    |--- 10:58-DEBUG_MEM-convert_ensembl : GTF deleted (#lines=641667, file=-, ptr_addr=0x7fbeb2db8830, id=4427222224, nb=2).
    python(49366,0x7fff77bed000) malloc: *** error for object 0x7fbeb2db9be0: pointer being freed was not allocated
    *** set a breakpoint in malloc_error_break to debug
    Abort trap: 6
fafa13 commented 6 years ago

The last push seems to fix this one too ... to be confirmed ! Well, the conversion to ensembl works but there is still a malloc error at the end.

dputhier commented 6 years ago

Yes, convertion works but ends up with a segfault when deleting GTF from memory.

fafa13 commented 6 years ago

Can you try now ?

dputhier commented 6 years ago

Whaou :). I guess this one is fixed now !