Hi,
I wrote a new command that print the GTF as BED. The user can pass a set of keys that are concatenated to become the 4th column. If you have time to review... (it pass all the test on the Python side). I'm not convince by "char keys_concat = (char )calloc(5000, sizeof(char));" in column.c. I tried to allocate and reallocate after concatenating the string but end up with a segfault. I told myself that column 4 of the bed file rarely goes beyond 5000 char. But If you have a better way (I guess).
Best
Hi, I wrote a new command that print the GTF as BED. The user can pass a set of keys that are concatenated to become the 4th column. If you have time to review... (it pass all the test on the Python side). I'm not convince by "char keys_concat = (char )calloc(5000, sizeof(char));" in column.c. I tried to allocate and reallocate after concatenating the string but end up with a segfault. I told myself that column 4 of the bed file rarely goes beyond 5000 char. But If you have a better way (I guess). Best