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dputhier / libgtftk

gtftk C Library and program
GNU General Public License v3.0
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pointer being freed was not allocated #97

Open dputhier opened 5 years ago

dputhier commented 5 years ago

Consider the following (in branch blast_to_gtf of pygtftk). This branch contains the latest ligtftk release (develop branch).

from pygtftk.gtf_interface import GTF
def native_str(x):
    return bytes(x.encode())
blast = GTF._dll.load_blast(native_str('blastn.blast'))
    blast.size
   [1]    22657 segmentation fault  ipython

NB: in this branch, blastn.blast can be found in pygtftk/data/mini_real_10M/ (as a gzip file). This file was obtained by blasting the computed sequence of transcripts (mini_real_10M_tx_seq.fa) against the genome region (chr1_hg38_10M.fa).

Cheers

dputhier commented 5 years ago

I guess this could be a OSX one...