Hi @fafa13 ,
In the get_sequence function, the chromosome names that are returned may contain additional information. Indeed, in the following case the string following " " (dna_sm:chromo...) should be discarded. Indeed, this information won't be present in the names of the chromosomes found in GTF files. Would it be possible to update this in the library ?
Best
Hi @fafa13 ,
In the get_sequence function, the chromosome names that are returned may contain additional information. Indeed, in the following case the string following " " (dna_sm:chromo...) should be discarded. Indeed, this information won't be present in the names of the chromosomes found in GTF files. Would it be possible to update this in the library ?
Best
dputhier
commented
2 years ago
Hi @fafa13 , In the get_sequence function, the chromosome names that are returned may contain additional information. Indeed, in the following case the string following " " (dna_sm:chromo...) should be discarded. Indeed, this information won't be present in the names of the chromosomes found in GTF files. Would it be possible to update this in the library ? Best
Should be:
Hi @fafa13 , In the get_sequence function, the chromosome names that are returned may contain additional information. Indeed, in the following case the string following " " (dna_sm:chromo...) should be discarded. Indeed, this information won't be present in the names of the chromosomes found in GTF files. Would it be possible to update this in the library ? Best