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dputhier / pygtftk

A python package and a set of shell commands to handle GTF files
GNU General Public License v3.0
45 stars 6 forks source link

peak_anno: idea for new argument "-rpm" #12

Closed dputhier closed 5 years ago

dputhier commented 6 years ago

This argument would normalize reads count to RPM (Reads in feature per million reads in sample). This would allow easier comparison of plots produced for different samples. The plot would also contains the normalization factor.

Thx Guillaume.

qferre commented 5 years ago

Is this still relevant now, given the new nature of peak_anno as a tool to compare regions themselves (in BED files) ?