Closed dputhier closed 3 years ago
Hi @dputhier, I have just tried to install it with no issue as described below. The installed python is 3.7. Installing software after the creation of the conda environment often lead to failures.
$ conda env create -f pygtftk.yaml
$ cat pygtftk.yaml
name:
pygtftk
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- pygtftk
@guillaumecharbonnier Hi Guillaume, I also managed to install it on a Linux and OSX machine. But for unknown reason I was unable to install it on this specific machine (which correspond to student machines @ AMU...). I was unable to get additional information regarding the issue...
Any insight with increased verbosity?
-v, --verbose Use once for info, twice for debug, three times for
trace.
Thank you Guillaume... But nothing really meaningful...
$ python --version
Python 3.7.9
(ologram_py37) V-PP-30-LUM-003 puthier ~
$ conda config --set unsatisfiable_hints True
(ologram_py37) V-PP-30-LUM-003 puthier ~
$ conda install -v -c bioconda pygtftk
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Solving environment: ...working...
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
Traceback (most recent call last):
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/cli/install.py", line 261, in install
unlink_link_transaction = solver.solve_for_transaction(
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 114, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 157, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 281, in solve_final_state
ssc = self._run_sat(ssc)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 815, in _run_sat
ssc.solution_precs = ssc.r.solve(tuple(final_environment_specs),
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/resolve.py", line 1320, in solve
raise UnsatisfiableError({})
conda.exceptions.UnsatisfiableError:
Did not find conflicting dependencies. If you would like to know which
packages conflict ensure that you have enabled unsatisfiable hints.
conda config --set unsatisfiable_hints True
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1079, in __call__
return func(*args, **kwargs)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/cli/main.py", line 84, in _main
exit_code = do_call(args, p)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 83, in do_call
return getattr(module, func_name)(args, parser)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/cli/main_install.py", line 20, in execute
install(args, parser, 'install')
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/cli/install.py", line 308, in install
raise e
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/cli/install.py", line 295, in install
unlink_link_transaction = solver.solve_for_transaction(
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 114, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 157, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 275, in solve_final_state
ssc = self._add_specs(ssc)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/core/solve.py", line 704, in _add_specs
ssc.r.find_conflicts(spec_set)
File "/amuhome/puthier/miniconda3/lib/python3.8/site-packages/conda/resolve.py", line 352, in find_conflicts
raise UnsatisfiableError(bad_deps, strict=strict_channel_priority)
conda.exceptions.UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Got this message ("UnsatisfiableError: The following specifications were found to be incompatible with each other") but without any listed dependency....
I tried to remove any Python lib installed in my home directory but without success (rm -rf .local/lib/python*).
@guillaumecharbonnier do you have any idea ?