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dputhier / pygtftk

A python package and a set of shell commands to handle GTF files
GNU General Public License v3.0
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AttributeError: 'Series' object has no attribute 'append' #184

Closed gyanmishra closed 4 weeks ago

gyanmishra commented 7 months ago

Hi

I am having the below mentioned issue while running gtftk ologram --more-bed option. 

Traceback (most recent call last):
  File "/home2/s225347/.conda/envs/pygtftk/bin/gtftk", line 110, in <module>
    args = main()
  File "/home2/s225347/.conda/envs/pygtftk/bin/gtftk", line 94, in main
    CmdManager.run(args)
  File "/home2/s225347/.conda/envs/pygtftk/lib/python3.9/site-packages/pygtftk/cmd_manager.py", line 963, in run
    fun(**args)
  File "/home2/s225347/.conda/envs/pygtftk/lib/python3.9/site-packages/pygtftk/plugins/ologram.py", line 1091, in ologram
    plot_results(d, data_file, pdf_file, pdf_width, pdf_height, feature_order, more_bed_multiple_overlap,
  File "/home2/s225347/.conda/envs/pygtftk/lib/python3.9/site-packages/pygtftk/plugins/ologram.py", line 1390, in plot_results
    p1, p1_feature_order = plot_this(statname='summed_bp_overlaps',
  File "/home2/s225347/.conda/envs/pygtftk/lib/python3.9/site-packages/pygtftk/plugins/ologram.py", line 1171, in plot_this
    errorbar_mins = errorbar_mins.append(na_series)
  File "/home2/s225347/.conda/envs/pygtftk/lib/python3.9/site-packages/pandas/core/generic.py", line 6299, in __getattr__
    return object.__getattribute__(self, name)
AttributeError: 'Series' object has no attribute 'append'
dputhier commented 7 months ago

This could be related to pandas version. What is your current pandas version ? Could you try with 1.1.2 ? Best