provide user with default exclude regions.

dputhier / pygtftk

A python package and a set of shell commands to handle GTF files

GNU General Public License v3.0

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Closed dputhier closed 5 years ago

dputhier commented 5 years ago

Requires to get this regions. Could be a mappability tracks. Which word sizes ?

qferre commented 5 years ago

I am still a bit iffy about that. As you said, it requires settling on a standard word size, as well as a cutoff for the bigwig mappability signal.

Perhaps we could leave this decision to the user ?

qferre commented 5 years ago

I am closing this since while discussing it directly we elected to indeed leave this decision to the user.