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dputhier
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pygtftk
A python package and a set of shell commands to handle GTF files
GNU General Public License v3.0
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warning upon installation
#135
dputhier
closed
2 years ago
2
profile: warning in doc
#134
dputhier
closed
3 years ago
0
Remaining warnings in doc
#133
dputhier
closed
3 years ago
2
ologram.rst:247: WARNING: Error in "code-block" directive: maximum 1 argument(s) allowed, 20 supplied.
#132
dputhier
closed
3 years ago
2
ologram.rst:198: WARNING: Error in "command-output" directive: 1 argument(s) required, 0 supplied.
#131
dputhier
closed
3 years ago
4
several warnings when building docs [develop branch]
#130
dputhier
closed
4 years ago
3
ModuleNotFoundError: No module named 'cython'
#129
dputhier
closed
3 years ago
2
merge_attr error on Canis_lupus_familiaris
#128
dputhier
closed
4 years ago
0
ologram_modl_treeify_1 test error: wrong output under OSX
#127
dputhier
closed
4 years ago
3
ologram_modl_treeify_1 test error: add graphviz as a dependency in the conda build
#126
dputhier
closed
3 years ago
1
clang: error: unsupported option '-fopenmp'
#125
dputhier
closed
4 years ago
1
splicing_site issue with input key
#124
dputhier
closed
4 years ago
1
select_by_go_1 test failing with bioconda linux v1.1.2
#123
guillaumecharbonnier
closed
4 years ago
1
conda installation with OSX
#122
dputhier
closed
4 years ago
7
Ologram fails when testing overlaps in genomic subset
#121
DimKat
closed
4 years ago
7
gtftk get_5p_3p_coords: -n should support '*'
#120
dputhier
closed
4 years ago
0
unsupported string
#119
rimsaadouni
closed
4 years ago
0
--more-bed-labels should be facultative in OLOGRAM
#118
dputhier
closed
4 years ago
1
Ologram and py3.8
#117
dputhier
closed
3 years ago
14
gtftk coverage with -x / --matrix-out fails
#116
guillaumecharbonnier
closed
4 years ago
4
git merge failure in ologram doc
#115
guillaumecharbonnier
closed
4 years ago
1
pygtk should be compatible with 3.8
#114
dputhier
closed
3 years ago
2
Support for old ensembl release
#113
dputhier
closed
4 years ago
0
pygtftk should be compatible with 3.7
#112
dputhier
closed
4 years ago
1
Completion is erratic
#111
dputhier
opened
4 years ago
0
profile: TypeError: sequence item 0: expected str instance, int found
#110
dputhier
closed
4 years ago
0
Add tests with dataset mini_real_ens
#109
dputhier
opened
5 years ago
0
RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject
#108
dputhier
closed
3 years ago
2
Add a dataset with chromosome in ensembl format
#107
dputhier
closed
5 years ago
1
OLOGRAM : error and mix in chromosome types (string and integer)
#106
LeoPioger
closed
5 years ago
8
Incorporate some hotfix commits in dev branch
#105
dputhier
closed
5 years ago
1
The del_attr CLI should rely on fast/C version of dell_attr
#104
dputhier
closed
5 years ago
1
ImportError: cannot import name 'factorial'
#103
dputhier
closed
5 years ago
1
Documentation pages for OLOGRAM
#102
qferre
closed
5 years ago
13
Number of processors used should be one by default
#101
dputhier
closed
5 years ago
2
clarify select_by_key usage for first column: seqname/chrom
#100
guillaumecharbonnier
closed
5 years ago
3
Change help sections in pygtftk/stats to make them sphinx/rst compliant
#99
dputhier
closed
5 years ago
1
nose test failing on read_bed_as_list.pyx
#98
dputhier
closed
5 years ago
7
exclude.cpp:50:17: warning: using directive refers to implicitly-defined namespace 'std' using namespace std; ^ 1 warning generated.
#97
dputhier
closed
5 years ago
1
Error with saveas
#96
Norisad
closed
5 years ago
1
[ologram] extension issue
#95
yaskermezli
closed
5 years ago
3
Change gene to exon in ologram example
#94
dputhier
closed
5 years ago
1
Change hg38.genome to hg38 in example rst files
#93
dputhier
closed
5 years ago
0
'ascii' codec can't encode character '\xe9' in position 1645: ordinal not in range(128)
#92
dputhier
closed
5 years ago
2
Add a Codacy badge to README.rst
#91
codacy-badger
closed
5 years ago
0
convert output table from ologram in long format
#90
dputhier
closed
5 years ago
1
Shuffle Lr and Li across all chromosomes
#89
qferre
closed
3 years ago
3
adding key interactions in ologram...
#88
dputhier
closed
5 years ago
1
The p-value of ologram change from one call to another
#87
dputhier
closed
5 years ago
10
Add a diagram that display both S and N
#86
dputhier
closed
5 years ago
5
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