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dputhier / scigenex

This repository stores the scigenex R library.
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gene_clustering methods (1 & 2) should be clarified in the help section #105

Open dputhier opened 1 year ago

dputhier commented 1 year ago

Here the text indicate that a graph was previously constructed which is not the case.

' * when 'keep_nn = FALSE', the method construct a graph only based on the previously selected genes.

' * when 'keep_nn = TRUE', the method conserve the graph constructed using select_genes with selected genes and their nearest neighbors.

' Then the method use the MCL algorithm to detect clusters of co-expressed genes.

dputhier commented 1 year ago

These methods should be renamed. closest_neighborhood reciprocal_neighborhood