Closed dputhier closed 2 years ago
Got this error when using plot_heatmap
> plot_heatmap(dbf, use_top_genes=TRUE, cluster = 1) |-- Centering matrix. |-- Ordering cells based on hierarchical clustering. |-- Ceiling matrix. |-- Flooring matrix. Error in m[genes_top, ] : subscript out of bounds > dbf@top_genes gene.top.1 gene.top.2 gene.top.3 gene.top.4 gene.top.5 cluster.1 "H2-K1" "Ccl21a" "Fcgbp" "Ifi27l2a" "H2-D1" cluster.2 "Gapdh" "Stmn1" "Ubb" "Hmgn2" "Pclaf" cluster.3 "Gm48228" "Mgat4c" "Gucy2g" "Abca17" "5033417F24Rik" cluster.4 "1700024I08Rik" "Gm17200" "Crocc2" "Gm45418" "Gm19689" cluster.5 "Gm36356" "1700029N11Rik" "Ttll6" "Gmnc" "Tsix" cluster.6 "mt-Co1" "mt-Atp6" "Rps14" "Rps28" "Rpl37a" cluster.7 "Gm553" "Gm5784" "5430431A17Rik" "Gabra2" "Trav10n" cluster.8 "Rpl30" "Rpl22" "Atp5mpl" "Rpl23" "Rpl34" cluster.9 "Rmnd5a" "Endou" "Ccnd3" "Satb1" "Ets2" cluster.10 "Rplp1" "Rpsa" "Actb" "Rplp0" "Laptm5" cluster.11 "Rps21" "Fau" "Rps26" "Chchd2" "Rpl8" cluster.12 "Tmod2" "Cngb1" "Gm43848" "Gm29562" "Tigd5" cluster.13 "Rps17" "Map1lc3b" "Psma3" "Gm10076" "Uqcr10" cluster.14 "G530011O06Rik" "1700041G16Rik" "Mkrn3" "Cmklr1" "Zfp456" cluster.15 "mt-Co3" "mt-Co2" "Rps16" "Rps20" "Tpt1" cluster.16 "Rps19" "Rpl19" "Rps6" "Rpl12" "Rps5" cluster.17 "Gucy2e" "Spink12" "Serinc2" "Gm16196" "Gm13391" cluster.18 "B2m" "Pdia3" "Tmsb4x" "Npc2" "Atp1b3" cluster.19 "Boll" "Fignl2" "F8" "Sntb1" "Hoxa5" cluster.20 "Sis" "D630023F18Rik" "Mpo" "Padi4" "Arl4d" cluster.21 "B930018H19Rik" "Loxl4" "Gm38037" "A430110L20Rik" "Pcdh1" gene.top.6 gene.top.7 gene.top.8 gene.top.9 gene.top.10 cluster.1 "H2-Ab1" "H2-Eb1" "H2-Aa" "Mgp" "Igfbp4" cluster.2 "Snrpg" "Slc25a5" "Calm2" "Rpl15" "Cox7a2" cluster.3 "Myo3b" "Egf" "Upk1a" "Mamstr" "Cldn3" cluster.4 "Sypl2" "9630002D21Rik" "Meig1" "Gm16006" "Dnah10" cluster.5 "Lrfn2" "Chst5" "Adora2b" "Adm2" "Gjb6" cluster.6 "Rps29" "mt-Nd4" "Rpl10a" "Rps27" "Rpl3" cluster.7 "Dgkk" "4632428C04Rik" "Cxxc4" "Tmem136" "Wee2" cluster.8 "Rpl37" "Rps7" "Rps4x" "Rps15a" "Atp5j2" cluster.9 "Themis" "Myb" "Aqp11" "Rag2" "Arl5c" cluster.10 "Coro1a" "Rps10" "Rps9" "Rplp2" "Eef2" cluster.11 "Arhgdia" "Selplg" "Mbnl1" "Marcksl1" "Atp5g3" cluster.12 "Wtip" "Dennd5b" "Caskin2" "Zfp11" "Vpreb1" cluster.13 "Cct5" "Uba1" "Mapk1" "Tpi1" "Esd" cluster.14 "Poll" "Gpr137" "Ogfod3" "Ndufaf6" "L2hgdh" cluster.15 "mt-Nd1" "Rpl27a" "Rps15" "mt-Nd3" "mt-Nd2" cluster.16 "Rps2" "Rpl18a" "Hsp90ab1" "Hspe1" "Psmb8" cluster.17 "Fam189a2" "Gm4890" "Ticam2" "Grk5" "Pmaip1" cluster.18 "Nfkbia" "Sdf4" "Tagln2" "Rgs10" "Lbh" cluster.19 "Lrrc25" "Plek2" "Rom1" "Anxa8" "A730063M14Rik" cluster.20 "Taf4b" "Lrg1" "Fam110b" "Sept10" "Fitm2" cluster.21 "Rassf6" "Gpr160" "Gm5134" "Gm13546" "Zdhhc23"
Fixed in commit c760ede
JulieBvs
commented
2 years ago JulieBvs
commented
2 years ago
Got this error when using plot_heatmap