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dputhier / scigenex

This repository stores the scigenex R library.
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distance_method="kendall" #98

Closed dputhier closed 1 year ago

dputhier commented 1 year ago

This is not a good idea to have turned almost all examples with "kendall" distance as the computation of this distance is extremely slow. In fact it would take (10s of) hours to compute the distance matrix on a regular dataset...

dputhier commented 1 year ago

A solution would be to use the implementation of kendall in the cor() function. Could be faster maybe than the amap library(even multithreading dont help too much).

dputhier commented 1 year ago

Fix the problem by creating a dataset that is loaded for testing 19708e33701d771c7b98bbedbed0ef511e68fcae