run `rankPhyloMarkers` without running `analyzeGenomes` or `knownPhyloMarker` first

dr-joe-wirth / phantasm

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

MIT License

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Open dr-joe-wirth opened 1 year ago

dr-joe-wirth commented 1 year ago

all vs all blast, calculate core genes, make genet trees, make species tree, calculate cophenetic correlation coefficients.