Closed thisisliuqing closed 1 year ago
dr-joe-wirth
commented
1 year ago Thanks for bringing this bug to my attention! User feedback is crucial for continued development. I'd like to see if I can recreate this bug. Can you please share the 16S blastn results file (initialAnalysis/16S/query.16SrRNA.blastn) with me? Thanks for your help.
thisisliuqing
commented
1 year ago Thank you for your reply. The 16S blastn results file: RAST2:fig|6666666.412460.rna.59 NR_026333.1|Leptothrix mobilis|Feox-1|taxon:47994 96.055 1521 55 5 4 0.0 2471 RAST2:fig|6666666.412460.rna.59 NR_026108.1|Ideonella dechloratans|Anox B; ATCC 51718|taxon:36863 96.272 1502 51 5 3 0.0 2462 RAST2:fig|6666666.412460.rna.59 NR_175563.1|Caldimonas brevitalea|DSM 7029|taxon:413882 95.635 1535 58 9 5 0.0 2455 RAST2:fig|6666666.412460.rna.59 NR_151910.1|Ideonella sakaiensis|201-F6|taxon:1547922 96.051 1494 52 7 4 0.0 2425 RAST2:fig|6666666.412460.rna.59 NR_180394.1|Ideonella livida|TBM-1|taxon:2707176 95.925 1497 57 4 4 0.0 2423 RAST2:fig|6666666.412460.rna.59 NR_175474.1|Mitsuaria chitinivorans|HWN-4|taxon:2917965 95.523 1519 59 9 6 0.0 2420 RAST2:fig|6666666.412460.rna.59 NR_042651.1|Rivibacter subsaxonicus|BF49|taxon:457575 95.693 1509 53 12 8 0.0 2418 RAST2:fig|6666666.412460.rna.59 NR_041768.1|Methylibium petroleiphilum PM1|PM1|taxon:420662 95.446 1515 60 9 5 0.0 2407 RAST2:fig|6666666.412460.rna.59 NR_024710.1|Pelomonas saccharophila|DSM 654|taxon:304 95.343 1503 68 2 2 0.0 2394 RAST2:fig|6666666.412460.rna.59 NR_042385.1|Rubrivivax benzoatilyticus JA2 = ATCC BAA-35|JA2|taxon:987059 95.652 1495 53 12 9 0.0 2390 RAST2:fig|6666666.412460.rna.59 NR_134232.1|Caldimonas caldifontis|YIM 78140|taxon:1452508 95.138 1522 63 11 5 0.0 2390 RAST2:fig|6666666.412460.rna.59 NR_180789.1|Aquabacterium terrae|S2|taxon:2732868 96.033 1462 51 7 4 0.0 2372 RAST2:fig|6666666.412460.rna.59 NR_043913.1|Aquincola tertiaricarbonis|L10|taxon:391953 96.210 1451 50 5 2 0.0 2370 RAST2:fig|6666666.412460.rna.59 NR_025916.1|Leptothrix discophora|SS-1; ATCC 43182|taxon:89 95.494 1487 60 7 7 0.0 2368 RAST2:fig|6666666.412460.rna.59 NR_104787.1|Sphaerotilus natans subsp. natans DSM 6575|DSM 6575|taxon:1286631 94.851 1515 73 5 5 0.0 2361 RAST2:fig|6666666.412460.rna.59 NR_025841.1|Rubrivivax gelatinosus|ATH 2.2.1; ATCC 17011|taxon:28068 96.072 1451 52 5 2 0.0 2359 RAST2:fig|6666666.412460.rna.59 NR_174253.1|Azohydromonas sediminis|SYSU G00088|taxon:2259674 95.296 1488 63 7 4 0.0 2353 RAST2:fig|6666666.412460.rna.59 NR_115049.1|Pelomonas saccharophila|ATCC 15946|taxon:304 95.516 1472 64 2 2 0.0 2351 RAST2:fig|6666666.412460.rna.59 NR_148652.1|Ideonella paludis|KBP-31|taxon:1233411 97.194 1390 39 0 0 0.0 2351 RAST2:fig|6666666.412460.rna.59 NR_179761.1|Rubrivivax albus|ICH-3|taxon:2499835 95.745 1457 56 6 3 0.0 2342 RAST2:fig|6666666.412460.rna.59 NR_040786.1|Mitsuaria chitosanitabida|3001|taxon:65048 95.097 1489 64 9 6 0.0 2337 RAST2:fig|6666666.412460.rna.59 NR_041244.1|Azohydromonas lata|IAM 12599|taxon:45677 95.551 1461 60 5 2 0.0 2333 RAST2:fig|6666666.412460.rna.59 NR_041585.1|Rhizobacter dauci|H6|taxon:431677 95.094 1488 57 16 12 0.0 2329 RAST2:fig|6666666.412460.rna.59 NR_114103.1|Azohydromonas lata|NBRC 102462|NBRC:102462 95.598 1454 59 5 2 0.0 2326 RAST2:fig|6666666.412460.rna.59 NR_115010.1|Caldimonas hydrothermale|HAN-85|taxon:391358 94.412 1521 72 13 6 0.0 2326 RAST2:fig|6666666.412460.rna.59 NR_043921.1|Piscinibacter aquaticus|IMCC1728|taxon:392597 95.245 1472 62 8 5 0.0 2324 RAST2:fig|6666666.412460.rna.59 NR_041367.1|Rhizobacter fulvus|Gsoil 322|taxon:363843 95.132 1479 61 11 7 0.0 2322 RAST2:fig|6666666.412460.rna.59 NR_149204.1|Azohydromonas ureilytica|UCM-80|taxon:1778667 95.411 1460 58 9 6 0.0 2316 RAST2:fig|6666666.412460.rna.59 NR_178786.1|Schlegelella koreensis|ID0723|taxon:2742824 95.115 1474 62 10 6 0.0 2314 RAST2:fig|6666666.412460.rna.59 NR_114189.1|Pelomonas saccharophila|NBRC 103037|NBRC:103037 95.448 1450 64 2 2 0.0 2311 RAST2:fig|6666666.412460.rna.59 NR_174231.1|Aquincola rivuli|KYPY4|taxon:1862385 95.938 1428 52 6 3 0.0 2311 RAST2:fig|6666666.412460.rna.59 NR_114061.1|Piscinibacter aquaticus|NBRC 102349|NBRC:102349 95.402 1457 56 11 7 0.0 2309 RAST2:fig|6666666.412460.rna.59 NR_179196.1|Aquabacterium pictum|W35|taxon:2315236 95.455 1452 59 7 4 0.0 2309 RAST2:fig|6666666.412460.rna.59 NR_179749.1|Pseudorivibacter rhizosphaerae|C1-9|taxon:2570323 94.712 1494 62 17 11 0.0 2305 RAST2:fig|6666666.412460.rna.59 NR_179762.1|Inhella crocodyli|CCP-18|taxon:2499851 94.638 1492 73 7 4 0.0 2305 RAST2:fig|6666666.412460.rna.59 NR_025673.1|Caldimonas thermodepolymerans|K14; LMG 21644|taxon:215580 94.137 1518 79 10 7 0.0 2302 RAST2:fig|6666666.412460.rna.59 NR_115657.1|Azohydromonas lata|IAM 12599|taxon:45677 95.027 1468 60 13 10 0.0 2296 RAST2:fig|6666666.412460.rna.59 NR_180937.1|Azohydromonas caseinilytica|G-1-1-14|taxon:2728836 95.068 1460 65 7 4 0.0 2290 RAST2:fig|6666666.412460.rna.59 NR_114070.1|Mitsuaria chitosanitabida|NBRC 102408|NBRC:102408 95.055 1456 63 9 6 0.0 2281 RAST2:fig|6666666.412460.rna.59 NR_180055.1|Piscinibacter caeni|MQ-18|taxon:1861917 95.228 1446 61 8 4 0.0 2281 RAST2:fig|6666666.412460.rna.59 NR_152719.1|Piscinibacter defluvii|SH-1|taxon:1796922 94.972 1452 66 7 4 0.0 2270 RAST2:fig|6666666.412460.rna.59 NR_132677.1|Rhizobacter gummiphilus|NS21|taxon:946333 95.686 1414 55 6 6 0.0 2268 RAST2:fig|6666666.412460.rna.59 NR_024875.1|Aquabacterium commune|B8; DSM 11901|taxon:70586 95.625 1417 55 7 4 0.0 2266 RAST2:fig|6666666.412460.rna.59 NR_043920.1|Inhella inkyongensis|IMCC1713|taxon:392593 94.505 1474 73 8 5 0.0 2266 RAST2:fig|6666666.412460.rna.59 NR_036813.1|Roseateles depolymerans|61A; DSM 11813|taxon:76731 94.838 1453 68 7 4 0.0 2261 RAST2:fig|6666666.412460.rna.59 NR_174244.1|Aquabacterium lacunae|KMB7|taxon:2528630 94.547 1467 71 9 6 0.0 2257 RAST2:fig|6666666.412460.rna.59 NR_111995.1|Roseateles depolymerans|61A|taxon:76731 94.769 1453 69 7 4 0.0 2255 RAST2:fig|6666666.412460.rna.59 NR_108898.1|Inhella fonticola|TNR-25|taxon:759929 94.769 1453 67 9 6 0.0 2254 RAST2:fig|6666666.412460.rna.59 NR_178616.1|Rhizobacter bergeniae|PLGR-1|taxon:1395940 95.777 1397 57 2 2 0.0 2252 RAST2:fig|6666666.412460.rna.59 NR_104905.1|Vitreoscilla filiformis|L1401-2|taxon:63 94.589 1460 69 10 9 0.0 2250 RAST2:fig|6666666.412460.rna.59 NR_114244.1|Inhella inkyongensis|NBRC 103252|NBRC:103252 94.433 1455 74 7 4 0.0 2233 RAST2:fig|6666666.412460.rna.59 NR_112080.1|Hydrogenophaga flava|DSM 619|taxon:65657 93.171 1523 91 13 10 0.0 2230 RAST2:fig|6666666.412460.rna.59 NR_137381.1|Aquabacterium olei|NHI-1|taxon:1296669 94.338 1466 64 19 15 0.0 2230 RAST2:fig|6666666.412460.rna.59 NR_149203.1|Azohydromonas riparia|UCM-11|taxon:1778666 94.376 1458 72 10 6 0.0 2230 RAST2:fig|6666666.412460.rna.59 NR_024874.1|Aquabacterium parvum|B6; DSM 11968|taxon:70584 95.060 1417 63 7 4 0.0 2226 RAST2:fig|6666666.412460.rna.59 NR_159302.1|Mitsuaria noduli|HZ7|taxon:2052484 95.067 1419 62 8 6 0.0 2226 RAST2:fig|6666666.412460.rna.59 NR_029023.1|Hydrogenophaga atypica|BSB 41.8; DSM 15342|taxon:249409 93.063 1528 94 12 9 0.0 2224 RAST2:fig|6666666.412460.rna.59 NR_181045.1|Xylophilus rhododendri|KACC 21265|taxon:2697032 92.978 1538 89 19 12 0.0 2224 RAST2:fig|6666666.412460.rna.59 NR_122100.1|Sphaerotilus sulfidivorans|D-501|taxon:639200 94.818 1428 69 5 5 0.0 2222 RAST2:fig|6666666.412460.rna.59 NR_024934.1|Hylemonella gracilis ATCC 19624|ATCC 19624|taxon:887062 93.628 1491 87 8 8 0.0 2220 RAST2:fig|6666666.412460.rna.59 NR_024871.1|Aquabacterium citratiphilum|B4; DSM 11900|taxon:70582 94.926 1419 63 9 6 0.0 2220 RAST2:fig|6666666.412460.rna.59 NR_040787.1|Caldimonas manganoxidans|JCM 10698|taxon:196015 94.078 1469 74 13 7 0.0 2218 RAST2:fig|6666666.412460.rna.59 NR_024782.1|Diaphorobacter nitroreducens|NA10B|taxon:164759 93.054 1526 91 15 11 0.0 2217 RAST2:fig|6666666.412460.rna.59 NR_074643.1|Ramlibacter tataouinensis TTB310|TTB310|taxon:365046 92.993 1527 92 15 10 0.0 2213 RAST2:fig|6666666.412460.rna.59 NR_116396.1|Sphaerotilus montanus|HS|taxon:522889 95.113 1412 56 13 13 0.0 2213 RAST2:fig|6666666.412460.rna.59 NR_175442.1|Rhodoferax lacus|IMCC26218|taxon:2184758 92.950 1532 89 19 12 0.0 2213 RAST2:fig|6666666.412460.rna.59 NR_042941.1|Paucibacter toxinivorans|2C20|taxon:270368 94.638 1436 62 15 12 0.0 2211 RAST2:fig|6666666.412460.rna.59 NR_149234.1|Rhizobacter profundi|DS48-6-5|taxon:1550730 95.839 1370 54 3 3 0.0 2211 RAST2:fig|6666666.412460.rna.59 NR_169344.1|Caldimonas meghalayensis|AK31|taxon:1263962 95.167 1407 57 11 5 0.0 2211 RAST2:fig|6666666.412460.rna.59 NR_044941.1|Simplicispira metamorpha|DSM 1837|taxon:80881 92.876 1530 92 17 12 0.0 2209 RAST2:fig|6666666.412460.rna.59 NR_114105.1|Azohydromonas australica|NBRC 102464|NBRC:102464 94.093 1456 79 7 3 0.0 2206 RAST2:fig|6666666.412460.rna.59 NR_149183.1|Hydrogenophaga laconesensis|HWB-10|taxon:1805971 93.065 1514 96 9 6 0.0 2206 RAST2:fig|6666666.412460.rna.59 NR_179894.1|Simplicispira lacusdiani|CPCC 100842|taxon:2213010 93.126 1513 91 13 9 0.0 2206 RAST2:fig|6666666.412460.rna.59 NR_044322.1|Aquabacterium fontiphilum|CS-6|taxon:450365 94.495 1435 70 9 9 0.0 2204 RAST2:fig|6666666.412460.rna.59 NR_179992.1|Simplicispira suum|SC1-8|taxon:2109915 92.923 1526 91 17 12 0.0 2204 RAST2:fig|6666666.412460.rna.59 NR_108739.1|Aquabacterium limnoticum|ABP-4|taxon:708634 94.379 1441 69 12 9 0.0 2202 RAST2:fig|6666666.412460.rna.59 NR_115050.1|Pelomonas saccharophila|CCUG 32988|taxon:304 95.255 1391 64 2 2 0.0 2202 RAST2:fig|6666666.412460.rna.59 NR_115053.1|Pelomonas saccharophila|IAM 14368|taxon:304 95.255 1391 64 2 2 0.0 2202 RAST2:fig|6666666.412460.rna.59 NR_028718.1|Hydrogenophaga flava|2; CCUG 1658|taxon:65657 93.113 1510 91 13 10 0.0 2200 RAST2:fig|6666666.412460.rna.59 NR_113844.1|Caldimonas manganoxidans|NBRC 16448|NBRC:16448 94.037 1459 74 13 7 0.0 2200 RAST2:fig|6666666.412460.rna.59 NR_175564.1|Rhodoferax aquaticus|Gr-4|taxon:2527691 92.612 1543 93 21 14 0.0 2198 RAST2:fig|6666666.412460.rna.59 NR_024702.1|Curvibacter lanceolatus|ATCC 14669|taxon:86182 92.923 1512 92 15 10 0.0 2196 RAST2:fig|6666666.412460.rna.59 NR_041243.1|Azohydromonas australica|IAM 12664|taxon:364039 94.069 1450 79 7 3 0.0 2194 RAST2:fig|6666666.412460.rna.59 NR_175457.1|Ramlibacter humi|18x22-1|taxon:2530451 93.369 1493 84 15 10 0.0 2194 RAST2:fig|6666666.412460.rna.59 NR_026506.1|Acidovorax defluvii|BSB411; DSM 12644|taxon:86669 92.689 1532 91 21 15 0.0 2193 RAST2:fig|6666666.412460.rna.59 NR_043226.1|Caldimonas taiwanensis|On1|taxon:307483 94.021 1455 74 13 7 0.0 2193 RAST2:fig|6666666.412460.rna.59 NR_042614.1|Pelomonas aquatica|CCUG 52575|taxon:431058 95.111 1391 66 2 2 0.0 2191 RAST2:fig|6666666.412460.rna.59 NR_173595.1|Aquariibacter albus|SJAQ100|taxon:2759899 95.061 1397 59 10 7 0.0 2189 RAST2:fig|6666666.412460.rna.59 NR_028717.1|Hydrogenophaga pseudoflava|GA3; ATCC 33668|taxon:47421 92.923 1512 94 13 10 0.0 2187 RAST2:fig|6666666.412460.rna.59 NR_102856.1|Acidovorax avenae|ATCC 19860|taxon:80867 92.773 1522 95 15 11 0.0 2187 RAST2:fig|6666666.412460.rna.59 NR_114858.1|Hydrogenophaga flava|DSM 619|taxon:65657 93.124 1498 90 13 10 0.0 2185 RAST2:fig|6666666.412460.rna.59 NR_117539.1|Sphaerotilus hippei|566|taxon:744406 94.808 1406 66 7 5 0.0 2185 RAST2:fig|6666666.412460.rna.59 NR_116495.1|Delftia lacustris|332|taxon:558537 92.629 1533 87 26 20 0.0 2182 RAST2:fig|6666666.412460.rna.59 NR_028655.1|Curvibacter gracilis|7-1; IAM 15033|taxon:230310 93.333 1485 84 15 10 0.0 2180 RAST2:fig|6666666.412460.rna.59 NR_175541.1|Aquabacterium soli|SJQ9|taxon:2493092 95.468 1368 59 3 3 0.0 2180 RAST2:fig|6666666.412460.rna.59 NR_024936.1|Hydrogenophaga palleronii|CCUG 20334|taxon:65655 92.730 1513 99 11 8 0.0 2174 RAST2:fig|6666666.412460.rna.59 NR_109656.1|Acidovorax wautersii|NF 1078|taxon:1177982 92.890 1505 94 13 9 0.0 2174 RAST2:fig|6666666.412460.rna.59 NR_114464.1|Acidovorax citrulli|ATCC 29625|ATCC:29625 92.739 1515 95 15 11 0.0 2174 RAST2:fig|6666666.412460.rna.59 NR_115051.1|Pelomonas saccharophila|LMG 2256|taxon:304 95.025 1387 64 5 5 0.0 2174 RAST2:fig|6666666.412460.rna.59 NR_118410.1|Acidovorax wautersii|NF 1078|taxon:1177982 92.890 1505 94 13 9 0.0 2174 RAST2:fig|6666666.412460.rna.59 NR_029024.1|Hydrogenophaga defluvii|BSB 9.5; DSM 15341|taxon:249410 92.819 1504 97 11 8 0.0 2172 RAST2:fig|6666666.412460.rna.59 NR_074760.1|Rhodoferax ferrireducens T118|T118|taxon:338969 92.443 1535 95 21 14 0.0 2172 RAST2:fig|6666666.412460.rna.59 NR_042616.1|Roseateles terrae|CCUG 52222|taxon:431060 94.960 1389 63 7 4 0.0 2170 RAST2:fig|6666666.412460.rna.59 NR_115054.1|Mitsuaria chitosanitabida|IAM 14711|taxon:65048 94.842 1396 63 9 6 0.0 2170 RAST2:fig|6666666.412460.rna.59 NR_025114.1|Xenophilus azovorans|KF46F; DSM 13620|taxon:151755 93.150 1489 84 18 12 0.0 2169 RAST2:fig|6666666.412460.rna.59 NR_113697.1|Hylemonella gracilis|NBRC 14920|NBRC:14920 93.668 1453 84 8 8 0.0 2169 RAST2:fig|6666666.412460.rna.59 NR_114462.1|Acidovorax avenae|ATCC 19860|ATCC:19860 92.673 1515 96 15 11 0.0 2169 RAST2:fig|6666666.412460.rna.59 NR_178354.1|Acidovorax carolinensis|NA3|taxon:553814 92.947 1503 85 21 15 0.0 2169 RAST2:fig|6666666.412460.rna.59 NR_028715.1|Acidovorax temperans|PHL; CCUG 11779|taxon:80878 92.673 1515 94 17 13 0.0 2167 RAST2:fig|6666666.412460.rna.59 NR_115151.1|Kinneretia asaccharophila|KIN192|taxon:582607 95.441 1360 60 2 2 0.0 2167 RAST2:fig|6666666.412460.rna.59 NR_044268.1|Hydrogenophaga bisanensis|K102|taxon:439611 93.078 1488 90 13 10 0.0 2165 RAST2:fig|6666666.412460.rna.59 NR_114465.1|Acidovorax cattleyae|NCPPB 961|taxon:80868 92.607 1515 97 15 11 0.0 2163 RAST2:fig|6666666.412460.rna.59 NR_042617.1|Roseateles aquatilis|CCUG 48205|taxon:431061 95.304 1363 62 2 2 0.0 2161 RAST2:fig|6666666.412460.rna.59 NR_115055.1|Roseateles depolymerans|CCUG 52219|taxon:76731 94.628 1396 68 7 4 0.0 2156 RAST2:fig|6666666.412460.rna.59 NR_179990.1|Ottowia oryzae|KADR8-3|taxon:2109914 92.353 1530 94 23 16 0.0 2156 RAST2:fig|6666666.412460.rna.59 NR_028714.1|Acidovorax delafieldii|133; ATCC 17505|taxon:47920 92.495 1519 91 23 17 0.0 2152 RAST2:fig|6666666.412460.rna.59 NR_125491.1|Limnohabitans curvus|MWH-C5|taxon:323423 92.607 1515 85 27 20 0.0 2152 RAST2:fig|6666666.412460.rna.59 NR_117497.1|Acidovorax cattleyae|ICMP 2826|taxon:80868 92.781 1496 93 15 11 0.0 2150 RAST2:fig|6666666.412460.rna.59 NR_125536.1|Rhodoferax saidenbachensis|ED16|taxon:1484693 92.748 1503 86 23 16 0.0 2150 RAST2:fig|6666666.412460.rna.59 NR_114424.1|Hydrogenophaga palleronii|DSM 63|taxon:65655 92.857 1484 95 11 8 0.0 2145 RAST2:fig|6666666.412460.rna.59 NR_114463.1|Acidovorax konjaci|ATCC 33996|ATCC:33996 92.338 1514 103 13 9 0.0 2141 RAST2:fig|6666666.412460.rna.59 NR_159166.1|Ramlibacter monticola|G-3-2|taxon:1926872 93.188 1468 83 17 12 0.0 2141 RAST2:fig|6666666.412460.rna.59 NR_042120.1|Acidovorax konjaci|DSM 7481|taxon:32040 92.637 1494 97 13 9 0.0 2139 RAST2:fig|6666666.412460.rna.59 NR_025510.1|Alicycliphilus denitrificans K601|K601|taxon:596154 92.435 1507 99 15 11 0.0 2137 RAST2:fig|6666666.412460.rna.59 NR_180938.1|Ramlibacter agri|G-1-2-2|taxon:2728837 92.920 1483 83 22 17 0.0 2137 RAST2:fig|6666666.412460.rna.59 NR_164981.1|Ottowia flava|GY511|taxon:2675430 92.121 1523 98 22 17 0.0 2135 RAST2:fig|6666666.412460.rna.59 NR_114133.1|Hydrogenophaga flava|NBRC 102514|NBRC:102514 93.210 1458 86 13 10 0.0 2132 RAST2:fig|6666666.412460.rna.59 NR_114518.1|Acidovorax konjaci|ICMP 7733|taxon:32040 92.727 1485 95 13 9 0.0 2132 RAST2:fig|6666666.412460.rna.59 NR_042615.1|Pelomonas puraquae|Ps10g|taxon:431059 95.377 1341 60 2 2 0.0 2132 RAST2:fig|6666666.412460.rna.59 NR_119298.1|Leptothrix discophora|SS-1|taxon:89 95.256 1349 57 7 6 0.0 2130 RAST2:fig|6666666.412460.rna.59 NR_125544.1|Limnohabitans australis|MWH-BRAZ-DAM2D|taxon:544681 92.435 1507 90 24 18 0.0 2130 RAST2:fig|6666666.412460.rna.59 NR_024935.1|Acidovorax facilis|CCUG 2113|taxon:12917 92.221 1517 97 21 15 0.0 2128 RAST2:fig|6666666.412460.rna.59 NR_028713.1|Curvibacter delicatus|146; LMG 4328|taxon:80879 92.528 1499 91 21 14 0.0 2128 RAST2:fig|6666666.412460.rna.59 NR_114201.1|Curvibacter lanceolatus|NBRC 103051|NBRC:103051 93.151 1460 85 15 10 0.0 2128 RAST2:fig|6666666.412460.rna.59 NR_117498.1|Acidovorax citrulli|ICMP 7500|taxon:80869 92.513 1496 96 16 12 0.0 2128 RAST2:fig|6666666.412460.rna.59 NR_175506.1|Ramlibacter algicola|CrO1|taxon:2795217 93.042 1466 86 16 11 0.0 2128 RAST2:fig|6666666.412460.rna.59 NR_041757.1|Acidovorax avenae|ICMP 3183|taxon:80867 92.665 1486 94 15 11 0.0 2126 RAST2:fig|6666666.412460.rna.59 NR_041756.1|Acidovorax cattleyae|ICMP 2826|taxon:80868 92.665 1486 94 15 11 0.0 2126 RAST2:fig|6666666.412460.rna.59 NR_117776.1|Acidovorax radicis N35|N35|taxon:999386 92.523 1498 91 21 15 0.0 2126 RAST2:fig|6666666.412460.rna.59 NR_112221.1|Curvibacter fontanus|AQ9|taxon:247486 92.722 1484 89 19 14 0.0 2124 RAST2:fig|6666666.412460.rna.59 NR_025834.1|Brachymonas denitrificans|AS-P1; JCM 9216|taxon:28220 93.132 1456 86 14 10 0.0 2122 RAST2:fig|6666666.412460.rna.59 NR_025421.1|Limnobacter thiooxidans|CS-K2|taxon:131080 92.488 1491 101 11 8 0.0 2122 RAST2:fig|6666666.412460.rna.59 NR_158145.1|Hydrogenophaga soli|S10|taxon:2025714 92.950 1461 97 6 6 0.0 2122 RAST2:fig|6666666.412460.rna.59 NR_041758.1|Acidovorax citrulli|ICMP 7500|taxon:80869 92.598 1486 95 15 11 0.0 2121 RAST2:fig|6666666.412460.rna.59 NR_115052.1|Pelomonas saccharophila|DSM 654|taxon:304 95.097 1346 64 2 2 0.0 2119 RAST2:fig|6666666.412460.rna.59 NR_158120.1|Hydrogenophaga aquatica|CC-KL-3|taxon:1854763 92.431 1493 100 13 10 0.0 2119 RAST2:fig|6666666.412460.rna.59 NR_043802.1|Schlegelella aquatica|wcf1|taxon:376175 94.300 1386 75 4 3 0.0 2119 RAST2:fig|6666666.412460.rna.59 NR_158124.1|Ramlibacter rhizophilus|THG-YS3.2.7|taxon:1781167 92.809 1474 89 17 12 0.0 2119 RAST2:fig|6666666.412460.rna.59 NR_178458.1|Paraburkholderia nemoris|LMG 31836|taxon:2793076 91.759 1529 115 11 5 0.0 2115 RAST2:fig|6666666.412460.rna.59 NR_125542.1|Limnohabitans parvus II-B4|II-B4|taxon:1293052 92.488 1491 89 23 19 0.0 2111 RAST2:fig|6666666.412460.rna.59 NR_114130.1|Hydrogenophaga pseudoflava|NBRC 102511|NBRC:102511 92.936 1458 90 13 10 0.0 2109 RAST2:fig|6666666.412460.rna.59 NR_043615.1|Variovorax dokdonensis|DS-43|taxon:344883 92.344 1489 101 13 9 0.0 2108 RAST2:fig|6666666.412460.rna.59 NR_116284.1|Brachymonas chironomi|AIMA4|taxon:491919 92.256 1498 96 20 15 0.0 2106 RAST2:fig|6666666.412460.rna.59 NR_114132.1|Hydrogenophaga palleronii|NBRC 102513|NBRC:102513 92.862 1457 93 11 8 0.0 2104 RAST2:fig|6666666.412460.rna.59 NR_159174.1|Ramlibacter alkalitolerans|CJ661|taxon:2039631 93.746 1407 80 8 7 0.0 2104 RAST2:fig|6666666.412460.rna.59 NR_169449.1|Rhodoferax sediminis|CHu59-6-5|taxon:2509614 92.515 1483 90 21 14 0.0 2104 RAST2:fig|6666666.412460.rna.59 NR_181557.1|Inhella gelatinilytica|4Y10|taxon:2795030 93.916 1397 78 7 4 0.0 2102 RAST2:fig|6666666.412460.rna.59 NR_043811.1|Variovorax soli|GH9-3; NBRC 106424|taxon:376815 92.443 1482 94 18 11 0.0 2100 RAST2:fig|6666666.412460.rna.59 NR_043769.1|Hydrogenophaga caeni|EMB71|taxon:370976 92.897 1450 95 8 8 0.0 2100 RAST2:fig|6666666.412460.rna.59 NR_116394.1|Thiomonas islandica|6C|taxon:545537 92.163 1493 104 13 9 0.0 2098 RAST2:fig|6666666.412460.rna.59 NR_178459.1|Paraburkholderia haematera|LMG 31837|taxon:2793077 91.563 1529 118 11 5 0.0 2098 RAST2:fig|6666666.412460.rna.59 NR_181556.1|Inhella proteolytica|1Y17|taxon:2795029 93.844 1397 78 8 5 0.0 2097 RAST2:fig|6666666.412460.rna.59 NR_114857.1|Hydrogenophaga pseudoflava|DSM 1034|taxon:47421 92.396 1473 99 13 11 0.0 2095 RAST2:fig|6666666.412460.rna.59 NR_178457.1|Paraburkholderia domus|LMG 31832|taxon:2793075 91.503 1530 117 13 7 0.0 2093 RAST2:fig|6666666.412460.rna.59 NR_109102.1|Variovorax defluvii|2C1-b|taxon:913761 92.011 1502 101 19 12 0.0 2091 RAST2:fig|6666666.412460.rna.59 NR_112562.1|Variovorax ginsengisoli|Gsoil 3165|taxon:363844 92.112 1496 99 19 13 0.0 2091 RAST2:fig|6666666.412460.rna.59 NR_178233.1|Polaromonas ginsengisoli|Gsoil 115|taxon:363842 92.365 1480 96 17 15 0.0 2091 RAST2:fig|6666666.412460.rna.59 NR_133894.1|Xenophilus arseniciresistens|YW8|taxon:1283306 93.161 1433 83 15 10 0.0 2089 RAST2:fig|6666666.412460.rna.59 NR_175426.1|Rhodoferax aquaticus|Gr-4|taxon:2527691 92.422 1478 91 21 14 0.0 2089 RAST2:fig|6666666.412460.rna.59 NR_113696.1|Curvibacter delicatus|NBRC 14919|NBRC:14919 92.628 1465 87 21 14 0.0 2087 RAST2:fig|6666666.412460.rna.59 NR_132598.1|Hydrogenophaga temperata|TR7-01|taxon:266129 92.608 1461 95 13 10 0.0 2087 RAST2:fig|6666666.412460.rna.59 NR_043752.1|Acidovorax oryzae ATCC 19882|FC-143|ATCC:19882 92.502 1467 95 15 11 0.0 2085 RAST2:fig|6666666.412460.rna.59 NR_113643.1|Simplicispira metamorpha|NBRC 13960|NBRC:13960 92.613 1462 91 17 12 0.0 2085 RAST2:fig|6666666.412460.rna.59 NR_041947.1|Acidovorax anthurii||taxon:78229 91.987 1485 104 15 9 0.0 2085 RAST2:fig|6666666.412460.rna.59 NR_181055.1|Limnohabitans radicicola|JUR4|taxon:2771427 92.272 1488 86 29 23 0.0 2084 RAST2:fig|6666666.412460.rna.59 NR_114131.1|Hydrogenophaga taeniospiralis CCUG 15921|NBRC 102512|NBRC:102512 92.534 1460 96 13 8 0.0 2080 RAST2:fig|6666666.412460.rna.59 NR_043773.1|Simplicispira limi|EMB325|taxon:370980 92.593 1458 93 15 9 0.0 2080 RAST2:fig|6666666.412460.rna.59 NR_104960.1|Robbsia andropogonis|LMG 2129|taxon:28092 92.075 1489 99 19 12 0.0 2078 RAST2:fig|6666666.412460.rna.59 NR_180791.1|Caenimonas soli|S4|taxon:2735555 92.497 1466 88 22 15 0.0 2078 RAST2:fig|6666666.412460.rna.59 NR_102845.1|Paraburkholderia phytofirmans PsJN|PsJN|taxon:398527 91.350 1526 121 11 5 0.0 2076 RAST2:fig|6666666.412460.rna.59 NR_125541.1|Limnohabitans planktonicus II-D5|II-D5|taxon:1293045 92.035 1494 94 25 21 0.0 2076 RAST2:fig|6666666.412460.rna.59 NR_147778.1|Comamonas phosphati|WYH 22-41|taxon:1211803 91.952 1491 107 13 10 0.0 2076 RAST2:fig|6666666.412460.rna.59 NR_025203.1|Ramlibacter henchirensis|TMB834; DSM 14656|taxon:204072 93.849 1382 77 8 7 0.0 2074 RAST2:fig|6666666.412460.rna.59 NR_114013.1|Comamonas granuli NBRC 101663|NBRC 101663|NBRC:101663 92.461 1459 95 15 11 0.0 2071 RAST2:fig|6666666.412460.rna.59 NR_114300.1|Variovorax soli NBRC 106424|NBRC 106424|NBRC:106424 92.413 1463 94 17 10 0.0 2071 RAST2:fig|6666666.412460.rna.59 NR_074325.2|Paraburkholderia xenovorans LB400|LB400|taxon:266265 91.188 1532 124 11 5 0.0 2071 RAST2:fig|6666666.412460.rna.59 NR_132676.1|Hydrogenophaga electricum|AR20|taxon:1230953 92.392 1459 97 14 11 0.0 2071 RAST2:fig|6666666.412460.rna.59 NR_175452.1|Paraburkholderia dioscoreae|LMG 31881|taxon:2604047 91.236 1529 123 11 5 0.0 2071 RAST2:fig|6666666.412460.rna.59 NR_181855.1|Paraburkholderia saeva|LMG 31841|taxon:2777537 91.248 1531 119 15 9 0.0 2071 RAST2:fig|6666666.412460.rna.59 NR_125558.1|Caballeronia terrestris|R-23321; A13-11R-23321|taxon:1226301 91.480 1514 116 13 7 0.0 2069 RAST2:fig|6666666.412460.rna.59 NR_133803.1|Ottowia beijingensis|GCS-AN-3|taxon:1207057 91.784 1497 108 15 10 0.0 2069 RAST2:fig|6666666.412460.rna.59 NR_153664.1|Burkholderia catarinensis|89|taxon:1108140 91.242 1530 119 15 10 0.0 2069 RAST2:fig|6666666.412460.rna.59 NR_159921.1|Simplicispira soli|CA-16|taxon:2083185 92.461 1459 92 18 14 0.0 2069 RAST2:fig|6666666.412460.rna.59 NR_169352.1|Variovorax rhizosphaerae|UCM-G28|taxon:1836200 92.203 1475 96 19 13 0.0 2069 RAST2:fig|6666666.412460.rna.59 NR_181648.1|Paraburkholderia acidicola|ATCC 31363|taxon:1912599 91.134 1534 123 13 8 0.0 2067 RAST2:fig|6666666.412460.rna.59 NR_158138.1|Hydrogenophaga crassostreae|LPB0072|taxon:1763535 92.397 1460 93 18 13 0.0 2065 RAST2:fig|6666666.412460.rna.59 NR_165706.1|Paraburkholderia dokdonella|DCR-13|taxon:2211211 91.075 1535 124 13 8 0.0 2063 RAST2:fig|6666666.412460.rna.59 NR_025376.1|Comamonas nitrativorans|23310; DSM 13191|taxon:108437 91.611 1502 111 15 12 0.0 2061 RAST2:fig|6666666.412460.rna.59 NR_116740.1|Acidovorax soli|BL21|taxon:592050 92.718 1442 84 21 17 0.0 2061 RAST2:fig|6666666.412460.rna.59 NR_113870.1|Delftia tsuruhatensis|NBRC 16741|NBRC:16741 92.292 1466 88 25 19 0.0 2060 RAST2:fig|6666666.412460.rna.59 NR_149814.1|Limnobacter humi|UCM-39|taxon:1778671 92.271 1462 97 16 11 0.0 2060 RAST2:fig|6666666.412460.rna.59 NR_169351.1|Variovorax ureilyticus|UCM-2|taxon:1836198 92.224 1466 97 17 11 0.0 2060 RAST2:fig|6666666.412460.rna.59 NR_108842.1|Pseudorhodoferax aquiterrae|NAFc-7|taxon:747304 92.376 1456 94 17 13 0.0 2058 RAST2:fig|6666666.412460.rna.59 NR_043890.1|Paraburkholderia ferrariae|FeGl01|taxon:386056 91.142 1524 124 11 6 0.0 2058 RAST2:fig|6666666.412460.rna.59 NR_027534.1|Ramlibacter tataouinensis|TTB310; DSM 14655|taxon:94132 92.580 1442 91 16 11 0.0 2056 RAST2:fig|6666666.412460.rna.59 NR_169353.1|Variovorax robiniae|UCM-G35|taxon:1836199 92.062 1474 98 19 13 0.0 2056 RAST2:fig|6666666.412460.rna.59 NR_113178.1|Paraburkholderia bannensis NBRC 103871|E25|taxon:1218075 91.171 1529 112 23 15 0.0 2054 RAST2:fig|6666666.412460.rna.59 NR_179020.1|Pandoraea fibrosis|6399|taxon:1891094 90.998 1533 125 13 8 0.0 2054 RAST2:fig|6666666.412460.rna.59 NR_102890.1|Burkholderia lata|383|taxon:482957 91.052 1531 120 17 12 0.0 2052 RAST2:fig|6666666.412460.rna.59 NR_114646.1|Rhodoferax ferrireducens T118|T118|taxon:338969 92.057 1473 96 21 14 0.0 2052 RAST2:fig|6666666.412460.rna.59 NR_024786.1|Delftia tsuruhatensis|T7|taxon:180282 92.213 1464 88 26 20 0.0 2049 RAST2:fig|6666666.412460.rna.59 NR_112533.1|Comamonas granuli NBRC 101663|Ko03|taxon:1223521 92.398 1447 95 15 11 0.0 2049 RAST2:fig|6666666.412460.rna.59 NR_116099.1|Xenophilus aerolatus|5516S-2|taxon:452922 93.059 1412 79 19 13 0.0 2047 RAST2:fig|6666666.412460.rna.59 NR_025404.1|Bordetella trematum|DSM 11334|taxon:123899 90.945 1524 127 11 8 0.0 2041 RAST2:fig|6666666.412460.rna.59 NR_074312.2|Burkholderia thailandensis E264|E264|ATCC:700388 90.874 1534 122 18 13 0.0 2041 RAST2:fig|6666666.412460.rna.59 NR_175484.1|Ramlibacter pinisoli|MAH-25|taxon:2682844 93.650 1370 77 10 8 0.0 2039 RAST2:fig|6666666.412460.rna.59 NR_074823.1|Cupriavidus taiwanensis LMG 19424|LMG 19424|taxon:977880 90.820 1536 121 20 16 0.0 2037 RAST2:fig|6666666.412460.rna.59 NR_133837.1|Ramlibacter solisilvae|5-10|taxon:1349425 92.066 1462 95 21 14 0.0 2037 RAST2:fig|6666666.412460.rna.59 NR_044039.1|Comamonas composti|YY287|taxon:408558 91.740 1477 103 19 15 0.0 2034 RAST2:fig|6666666.412460.rna.59 NR_179913.1|Ottowia konkukae|SK3863|taxon:2338647 92.014 1465 92 25 18 0.0 2034 RAST2:fig|6666666.412460.rna.59 NR_118637.1|Burkholderia rinojensis|A396|taxon:1410040 90.838 1528 123 17 12 0.0 2030 RAST2:fig|6666666.412460.rna.59 NR_159298.1|Melaminivora jejuensis|KBB12|taxon:1267217 91.427 1493 109 19 14 0.0 2030 RAST2:fig|6666666.412460.rna.59 NR_145599.1|Caballeronia arationis|LMG 29324|taxon:1777142 91.465 1488 110 17 11 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_134009.1|Comamonas humi|GAU11|taxon:1457523 91.964 1456 104 13 10 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_145548.1|Hydrogenophaga luteola|THG-SQE7|taxon:1591122 92.726 1416 85 18 15 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_179056.1|Saezia sanguinis|CNM695-12|taxon:1965230 91.763 1469 105 16 13 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_180488.1|Paraburkholderia acidiphila|7Q-K02|taxon:2571747 90.772 1528 128 13 8 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_181361.1|Undibacterium rugosum|CY7W|taxon:2762291 91.243 1496 122 9 6 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_181363.1|Undibacterium curvum|CY22W|taxon:2762294 91.243 1496 122 9 6 0.0 2028 RAST2:fig|6666666.412460.rna.59 NR_157013.1|Delftia rhizosphaerae|RA6|taxon:1915059 91.826 1468 97 23 16 0.0 2026 RAST2:fig|6666666.412460.rna.59 NR_169389.1|Comamonas faecalis|FF42|taxon:1387849 91.667 1476 103 20 15 0.0 2026 RAST2:fig|6666666.412460.rna.59 NR_181170.1|Noviherbaspirillum arenae|M1|taxon:2678755 90.737 1533 123 19 15 0.0 2026 RAST2:fig|6666666.412460.rna.59 NR_145600.1|Caballeronia fortuita|LMG 29320|taxon:1777138 91.404 1489 110 18 12 0.0 2025 RAST2:fig|6666666.412460.rna.59 NR_118396.1|Acidovorax avenae|BC523|taxon:80867 92.383 1431 94 15 11 0.0 2025 RAST2:fig|6666666.412460.rna.59 NR_118397.1|Acidovorax citrulli|BC525|taxon:80869 92.383 1431 94 15 11 0.0 2025 RAST2:fig|6666666.412460.rna.59 NR_152628.1|Burkholderia humptydooensis|MSMB43|taxon:430531 90.999 1511 123 13 8 0.0 2025 RAST2:fig|6666666.412460.rna.59 NR_152630.1|Burkholderia humptydooensis|MSMB43|taxon:430531 90.999 1511 123 13 8 0.0 2025 RAST2:fig|6666666.412460.rna.59 NR_174202.1|Chitinasiproducens palmae|JS23|taxon:1770053 91.287 1492 119 11 6 0.0 2025 RAST2:fig|6666666.412460.rna.59 NR_074299.2|Burkholderia mallei|ATCC 23344|ATCC:23344 90.672 1533 126 17 12 0.0 2023 RAST2:fig|6666666.412460.rna.59 NR_043186.1|Giesbergeria voronezhensis|D-419|taxon:314200 91.375 1484 110 18 13 0.0 2023 RAST2:fig|6666666.412460.rna.59 NR_117265.1|Comamonas zonglianii|BF-3|taxon:663949 91.907 1458 101 17 14 0.0 2023 RAST2:fig|6666666.412460.rna.59 NR_152705.1|Paraburkholderia pallidirosea|DHOK13|taxon:1752142 91.293 1493 115 15 9 0.0 2023 RAST2:fig|6666666.412460.rna.59 NR_170459.1|Hydrogenophaga borbori|LA-38|taxon:2294117 91.689 1468 109 13 10 0.0 2023 RAST2:fig|6666666.412460.rna.59 NR_145601.1|Caballeronia temeraria|LMG 29319|taxon:1777137 91.360 1493 105 24 18 0.0 2021 RAST2:fig|6666666.412460.rna.59 NR_180501.1|Paraburkholderia atlantica|CNPSo 3155|taxon:2654982 90.701 1527 129 13 7 0.0 2021 RAST2:fig|6666666.412460.rna.59 NR_145598.1|Caballeronia pedi|LMG 29323|taxon:1777141 91.348 1491 107 22 16 0.0 2019 RAST2:fig|6666666.412460.rna.59 NR_044472.1|Diaphorobacter oryzae|RF3|taxon:491745 92.761 1409 82 20 16 0.0 2019 RAST2:fig|6666666.412460.rna.59 NR_180500.1|Paraburkholderia franconis|CNPSo 3157|taxon:2654983 90.689 1525 131 11 6 0.0 2019 RAST2:fig|6666666.412460.rna.59 NR_181060.1|Undibacterium crateris|B2R-29|taxon:2528175 91.220 1492 120 11 8 0.0 2019 RAST2:fig|6666666.412460.rna.59 NR_041011.1|Comamonas badia|IAM 14839|taxon:265291 91.133 1500 116 17 12 0.0 2017 RAST2:fig|6666666.412460.rna.59 NR_109013.1|Polaromonas glacialis|Cr4-12|taxon:866564 91.287 1492 111 19 13 0.0 2017 RAST2:fig|6666666.412460.rna.59 NR_074687.1|Burkholderia ambifaria|AMMD|taxon:152480 90.654 1530 126 17 12 0.0 2017 RAST2:fig|6666666.412460.rna.59 NR_145597.1|Caballeronia glebae|LMG 29325|taxon:1777143 91.281 1491 108 22 16 0.0 2015 RAST2:fig|6666666.412460.rna.59 NR_152623.1|Acidovorax lacteus|M36|taxon:1924988 92.847 1398 86 14 10 0.0 2015 RAST2:fig|6666666.412460.rna.59 NR_164887.1|Cupriavidus malaysiensis|USMAA1020|taxon:367825 90.682 1524 128 14 10 0.0 2015 RAST2:fig|6666666.412460.rna.59 NR_170520.1|Pandoraea captiosa|LMG 31118|taxon:2508302 91.413 1479 114 13 8 0.0 2015 RAST2:fig|6666666.412460.rna.59 NR_145594.1|Caballeronia arvi|LMG 29317|taxon:1777135 91.269 1489 112 18 12 0.0 2013 RAST2:fig|6666666.412460.rna.59 NR_145602.1|Caballeronia calidae|LMG 29321|taxon:1777139 91.281 1491 108 22 16 0.0 2013 RAST2:fig|6666666.412460.rna.59 NR_102851.1|Cupriavidus necator|N-1|taxon:106590 90.682 1524 126 16 12 0.0 2013 RAST2:fig|6666666.412460.rna.59 NR_118268.1|Caballeronia grimmiae|R27|taxon:1071679 91.182 1497 109 23 17 0.0 2012 RAST2:fig|6666666.412460.rna.59 NR_181837.1|Ottowia caeni|BD-1|taxon:2870339 91.196 1488 119 12 9 0.0 2012 RAST2:fig|6666666.412460.rna.59 NR_043748.1|Caenimonas koreensis|EMB320; DSM 17982|taxon:367474 91.718 1461 102 19 12 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_112068.1|Paraburkholderia phenazinium|ATCC 33666|taxon:60549 90.454 1519 128 17 11 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_125559.1|Caballeronia telluris|LR-23326; A57-4|taxon:326475 90.969 1506 117 19 12 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_133710.1|Caballeronia cordobensis|R-50210|taxon:1353886 91.214 1491 109 22 16 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_074704.1|Cupriavidus metallidurans CH34|CH34|taxon:266264 90.535 1532 127 18 13 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_125580.1|Paraburkholderia dilworthii|WSM3556|taxon:948106 90.861 1510 123 15 9 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_170515.1|Pandoraea anapnoica|LMG 31117|taxon:2508301 91.346 1479 115 13 8 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_170517.1|Pandoraea aquatica|LMG 31011|taxon:2508290 91.346 1479 115 13 8 0.0 2010 RAST2:fig|6666666.412460.rna.59 NR_116051.1|Burkholderia thailandensis E264|E264|ATCC:700388 90.813 1513 122 17 12 0.0 2008 RAST2:fig|6666666.412460.rna.59 NR_043859.1|Comamonas odontotermitis|Dant 3-8|taxon:379895 91.712 1460 101 20 17 0.0 2008 RAST2:fig|6666666.412460.rna.59 NR_040987.1|Cupriavidus pinatubonensis|1245|taxon:248026 90.576 1528 126 18 14 0.0 2008 RAST2:fig|6666666.412460.rna.59 NR_137222.1|Diaphorobacter nitroreducens|SL-205|taxon:164759 92.131 1436 93 20 16 0.0 2008 RAST2:fig|6666666.412460.rna.59 NR_152088.1|Paraburkholderia caffeinilytica|CF1|taxon:1761016 91.037 1495 123 11 6 0.0 2008 RAST2:fig|6666666.412460.rna.59 NR_170522.1|Pandoraea commovens|LMG 31010|taxon:2508289 91.278 1479 116 13 8 0.0 2008 RAST2:fig|6666666.412460.rna.59 NR_043552.1|Burkholderia oklahomensis C6786|C6786|taxon:441162 90.957 1504 117 19 14 0.0 2006 RAST2:fig|6666666.412460.rna.59 NR_178821.1|Diaphorobacter ruginosibacter|BN30|taxon:1715720 91.950 1441 102 14 9 0.0 2006 RAST2:fig|6666666.412460.rna.59 NR_044383.1|Paraburkholderia sediminicola|HU2-65W|taxon:458836 91.322 1475 117 11 5 0.0 2004 RAST2:fig|6666666.412460.rna.59 NR_145596.1|Caballeronia ptereochthonis|LMG 29326|taxon:1777144 91.141 1490 112 20 14 0.0 2002 RAST2:fig|6666666.412460.rna.59 NR_171504.1|Trinickia diaoshuihuensis|NEAU-SY24|taxon:2292265 90.523 1530 124 21 14 0.0 2002 RAST2:fig|6666666.412460.rna.59 NR_040963.1|Cupriavidus numazuensis|TE26|taxon:221992 90.398 1531 133 14 11 0.0 2001 RAST2:fig|6666666.412460.rna.59 NR_145595.1|Caballeronia hypogeia|LMG 29322|taxon:1777140 91.092 1493 109 24 18 0.0 2001 RAST2:fig|6666666.412460.rna.59 NR_170519.1|Pandoraea capi|LMG 20602|taxon:2508286 91.210 1479 117 13 8 0.0 2001 RAST2:fig|6666666.412460.rna.59 NR_171440.1|Paraburkholderia dinghuensis|DHOA04|taxon:2305225 91.037 1495 115 19 12 0.0 2001 RAST2:fig|6666666.412460.rna.59 NR_145605.1|Caballeronia catudaia|LMG 29318|taxon:1777136 91.080 1491 111 22 16 0.0 1999 RAST2:fig|6666666.412460.rna.59 NR_170516.1|Pandoraea anhela|LMG 31108|taxon:2508295 91.210 1479 117 13 8 0.0 1999 RAST2:fig|6666666.412460.rna.59 NR_028751.1|Pandoraea sputorum|LMG 18819|taxon:93222 91.044 1485 120 13 8 0.0 1997 RAST2:fig|6666666.412460.rna.59 NR_149767.1|Polaromonas eurypsychrophila|B717-2|taxon:1614635 92.103 1431 92 21 19 0.0 1997 RAST2:fig|6666666.412460.rna.59 NR_169323.1|Simplicispira hankyongi|NY-02|taxon:2315688 92.401 1408 94 13 8 0.0 1995 RAST2:fig|6666666.412460.rna.59 NR_178811.1|Burkholderia guangdongensis|DHOM02|taxon:1792500 90.958 1493 120 15 9 0.0 1995 RAST2:fig|6666666.412460.rna.59 NR_028749.1|Pandoraea apista|LMG 16407|taxon:93218 91.143 1479 118 13 8 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_028750.1|Pandoraea pulmonicola|LMG 18106|taxon:93221 91.143 1479 118 13 8 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_042633.1|Burkholderia diffusa|R-15930|taxon:488732 90.806 1501 123 15 10 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_125656.1|Ottowia shaoguanensis|J5-66|taxon:1335047 91.552 1456 108 15 10 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_170524.1|Pandoraea eparura|LMG 31012|taxon:2508291 91.143 1479 118 13 8 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_170527.1|Pandoraea morbifera|LMG 31116|taxon:2508300 91.143 1479 118 13 8 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_174193.1|Cupriavidus agavae|ASC-9842|taxon:1001822 90.380 1528 131 16 12 0.0 1993 RAST2:fig|6666666.412460.rna.59 NR_029212.1|Paraburkholderia phenazinium|A 1; LMG 2247|taxon:60549 91.575 1448 114 8 6 0.0 1991 RAST2:fig|6666666.412460.rna.59 NR_145604.1|Caballeronia turbans|LMG 29316|taxon:1777134 91.001 1489 116 18 12 0.0 1991 RAST2:fig|6666666.412460.rna.59 NR_042931.1|Paraburkholderia phytofirmans PsJN|PsJN|taxon:398527 90.940 1490 122 13 6 0.0 1991 RAST2:fig|6666666.412460.rna.59 NR_117902.1|Caballeronia zhejiangensis|OP-1|taxon:871203 90.921 1498 112 24 18 0.0 1991 RAST2:fig|6666666.412460.rna.59 NR_145603.1|Caballeronia concitans|LMG 29315|taxon:1777133 91.007 1490 113 21 15 0.0 1989 RAST2:fig|6666666.412460.rna.59 NR_042634.1|Burkholderia arboris|R-24201|taxon:488730 90.698 1505 123 17 12 0.0 1989 RAST2:fig|6666666.412460.rna.59 NR_179775.1|Paraburkholderia caseinilytica|HM451|taxon:2171978 90.879 1491 125 11 6 0.0 1989 RAST2:fig|6666666.412460.rna.59 NR_074668.1|Paraburkholderia phymatum STM815|STM815|taxon:391038 90.314 1528 133 15 10 0.0 1988 RAST2:fig|6666666.412460.rna.59 NR_170528.1|Pandoraea nosoerga|LMG 31109|taxon:2508296 91.075 1479 119 13 8 0.0 1988 RAST2:fig|6666666.412460.rna.59 NR_042584.1|Mycetohabitans endofungorum|HKI 456|taxon:417203 90.280 1533 128 21 16 0.0 1986 RAST2:fig|6666666.412460.rna.59 NR_028800.2|Cupriavidus taiwanensis LMG 19424|LMG 19424|taxon:977880 90.454 1519 125 20 16 0.0 1984 RAST2:fig|6666666.412460.rna.59 NR_165695.1|Burkholderia alba|AD18|taxon:2683677 91.081 1480 113 19 14 0.0 1984 RAST2:fig|6666666.412460.rna.59 NR_178810.1|Pararobbsia silviterrae|DHC34|taxon:1792498 90.812 1491 126 11 5 0.0 1984 RAST2:fig|6666666.412460.rna.59 NR_170523.1|Pandoraea communis|LMG 31110|taxon:2508297 91.007 1479 120 13 8 0.0 1982 RAST2:fig|6666666.412460.rna.59 NR_170525.1|Pandoraea horticolens|LMG 31112|taxon:2508298 91.007 1479 120 13 8 0.0 1982 RAST2:fig|6666666.412460.rna.59 NR_042636.1|Burkholderia metallica|R-16017|taxon:488729 90.631 1505 122 19 14 0.0 1980 RAST2:fig|6666666.412460.rna.59 NR_178850.1|Burkholderia paludis|MSh1|taxon:1506587 90.673 1501 123 17 12 0.0 1980 RAST2:fig|6666666.412460.rna.59 NR_029044.1|Paraburkholderia terricola|R 8118; LMG 20594|taxon:169427 90.654 1498 127 13 6 0.0 1978 RAST2:fig|6666666.412460.rna.59 NR_042404.1|Polaromonas aquatica|CCUG 39402|taxon:332657 92.193 1409 95 15 10 0.0 1978 RAST2:fig|6666666.412460.rna.59 NR_042594.1|Paraburkholderia megapolitana|A3|taxon:420953 90.848 1486 123 13 8 0.0 1978 RAST2:fig|6666666.412460.rna.59 NR_042632.1|Burkholderia latens|R-5630|taxon:488446 90.571 1506 125 17 12 0.0 1978 RAST2:fig|6666666.412460.rna.59 NR_025369.1|Bordetella petrii|Se-1111R; DSM 12804|taxon:94624 90.594 1499 128 13 10 0.0 1977 RAST2:fig|6666666.412460.rna.59 NR_114519.1|Pandoraea pnomenusa|LMG 18087|taxon:93220 91.076 1468 118 13 8 0.0 1977 RAST2:fig|6666666.412460.rna.59 NR_170518.1|Pandoraea bronchicola|LMG 20603|taxon:2508287 90.940 1479 121 13 8 0.0 1977 RAST2:fig|6666666.412460.rna.59 NR_170521.1|Pandoraea cepalis|BCCM/LMG 311106|taxon:2508294 90.940 1479 121 13 8 0.0 1977 RAST2:fig|6666666.412460.rna.59 NR_025137.1|Cupriavidus campinensis|WS2; LMG 19282|taxon:151783 90.793 1488 121 16 10 0.0 1975 RAST2:fig|6666666.412460.rna.59 NR_104563.1|Caballeronia sordidicola|S5-B|taxon:196367 91.045 1474 115 17 11 0.0 1975 RAST2:fig|6666666.412460.rna.59 NR_027569.1|Paraburkholderia unamae MTI-641|MTI-641|taxon:491072 90.738 1490 125 13 8 0.0 1975 RAST2:fig|6666666.412460.rna.59 NR_134704.1|Caballeronia megalochromosomata|JC2949|taxon:1399969 91.150 1469 111 19 13 0.0 1975 RAST2:fig|6666666.412460.rna.59 NR_149789.1|Comamonas sediminis|S3|taxon:1783360 91.448 1450 106 18 15 0.0 1975 RAST2:fig|6666666.412460.rna.59 NR_152002.1|Pandoraea terrae|SE-S21|taxon:1537710 91.283 1457 114 13 8 0.0 1975 RAST2:fig|6666666.412460.rna.59 NR_074291.1|Bordetella petrii|DSM 12804|taxon:94624 90.738 1490 123 15 12 0.0 1973 RAST2:fig|6666666.412460.rna.59 NR_040869.1|Cupriavidus laharis|1263a|taxon:151654 90.183 1528 131 19 15 0.0 1973 RAST2:fig|6666666.412460.rna.59 NR_115341.1|Thiomonas delicata|b6|taxon:364030 91.227 1459 113 15 11 0.0 1971 RAST2:fig|6666666.412460.rna.59 NR_164871.1|Paraburkholderia caffeinitolerans|CF3|taxon:1723730 90.629 1494 126 14 9 0.0 1971 RAST2:fig|6666666.412460.rna.59 NR_170531.1|Pandoraea terrigena|LMG 31013|taxon:2508292 90.872 1479 122 13 8 0.0 1971 RAST2:fig|6666666.412460.rna.59 NR_102769.1|Mycetohabitans rhizoxinica HKI 454|HKI 454|taxon:882378 90.124 1529 133 18 13 0.0 1971 RAST2:fig|6666666.412460.rna.59 NR_042813.1|Pandoraea pnomenusa|CCUG 38742|taxon:93220 91.114 1463 117 13 8 0.0 1969 RAST2:fig|6666666.412460.rna.59 NR_029213.2|Paraburkholderia graminis|C4D1M|taxon:60548 91.343 1444 117 8 5 0.0 1967 RAST2:fig|6666666.412460.rna.59 NR_025097.1|Paraburkholderia sacchari|IPT10; LMG 19450|taxon:159450 90.098 1525 136 15 10 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_042593.1|Paraburkholderia bryophila|1S18|taxon:420952 90.646 1486 127 12 6 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_042635.1|Burkholderia seminalis|R-2419; DSM 23518|taxon:488731 90.419 1503 125 19 14 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_108144.1|Thiomonas arsenitoxydans|3As|taxon:426114 91.355 1446 112 13 9 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_116248.1|Paraburkholderia rhynchosiae|WSM3937|taxon:487049 90.569 1495 126 15 8 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_170529.1|Pandoraea pneumonica|LMG 31114|taxon:2508299 90.805 1479 123 13 8 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_170530.1|Pandoraea soli|LMG 31014|taxon:2508293 90.805 1479 123 13 8 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_042393.1|Mycetohabitans rhizoxinica HKI 454|HKI 454|taxon:882378 90.065 1530 132 20 15 0.0 1965 RAST2:fig|6666666.412460.rna.59 NR_104978.1|Burkholderia contaminans|J2956|taxon:488447 90.665 1489 122 17 12 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_115185.1|Pandoraea apista|CCUG 38412|taxon:93218 91.046 1463 118 13 8 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_115186.1|Pandoraea pulmonicola|CCUG 38759|taxon:93221 91.046 1463 118 13 8 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_109160.1|Cupriavidus plantarum|ASC-64|taxon:942865 90.473 1501 125 18 13 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_174230.1|Burkholderia aenigmatica|LMG 13014|taxon:2015348 90.598 1489 123 17 12 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_180256.1|Limnobacter alexandrii|LZ-4|taxon:2570352 92.509 1375 97 6 6 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_180709.1|Paraburkholderia madseniana|RP11|taxon:2599607 90.841 1474 124 11 5 0.0 1964 RAST2:fig|6666666.412460.rna.59 NR_041386.1|Thiomonas delicata|NBRC 14566|taxon:364030 91.096 1460 115 15 11 0.0 1962 RAST2:fig|6666666.412460.rna.59 NR_041628.1|Thiomonas delicata|Hoe5|taxon:364030 91.090 1459 117 13 9 0.0 1962 RAST2:fig|6666666.412460.rna.59 NR_117661.1|Burkholderia pseudomultivorans|LMG 26883|taxon:1207504 90.598 1489 123 17 12 0.0 1962 RAST2:fig|6666666.412460.rna.59 NR_171525.1|Trinickia fusca|7MK8-2|taxon:2419777 90.604 1490 125 15 10 0.0 1962 RAST2:fig|6666666.412460.rna.59 NR_027587.1|Burkholderia thailandensis E264|E264|taxon:271848 90.556 1493 124 17 12 0.0 1960 RAST2:fig|6666666.412460.rna.59 NR_041720.1|Burkholderia vietnamiensis|LMG 10929|taxon:60552 90.556 1493 124 17 12 0.0 1960 RAST2:fig|6666666.412460.rna.59 NR_179130.1|Paraburkholderia panacisoli|DCY113|taxon:2603818 90.872 1468 122 12 7 0.0 1960 RAST2:fig|6666666.412460.rna.59 NR_025058.1|Paraburkholderia fungorum|LMG 16225|taxon:134537 90.786 1476 121 15 9 0.0 1958 RAST2:fig|6666666.412460.rna.59 NR_043553.1|Burkholderia pseudomallei|ATCC 23343|ATCC:23343 90.489 1493 125 17 12 0.0 1956 RAST2:fig|6666666.412460.rna.59 NR_114522.1|Burkholderia stabilis|LMG 14294|taxon:95485 90.537 1490 122 19 14 0.0 1956 RAST2:fig|6666666.412460.rna.59 NR_118872.1|Burkholderia vietnamiensis|TVV75|taxon:60552 91.154 1447 120 8 6 0.0 1956 RAST2:fig|6666666.412460.rna.59 NR_042610.1|Herminiimonas saxobsidens|NS11|taxon:427333 90.246 1507 132 15 10 0.0 1954 RAST2:fig|6666666.412460.rna.59 NR_176488.1|Vandammella animalimorsus||taxon:2029117 91.096 1460 106 24 16 0.0 1954 RAST2:fig|6666666.412460.rna.59 NR_178243.1|Caballeronia insecticola|RPE64|taxon:758793 91.034 1461 111 20 13 0.0 1954 RAST2:fig|6666666.412460.rna.59 NR_112060.1|Burkholderia pyrrocinia|ATCC 15958|taxon:60550 89.874 1511 134 19 14 0.0 1951 RAST2:fig|6666666.412460.rna.59 NR_112957.1|Paraburkholderia acidipaludis NBRC 101816|SA33|taxon:1218074 90.327 1499 130 15 10 0.0 1951 RAST2:fig|6666666.412460.rna.59 NR_117553.1|Burkholderia gladioli|CFBP 2427|taxon:28095 90.682 1481 117 21 16 0.0 1951 RAST2:fig|6666666.412460.rna.59 NR_179132.1|Paraburkholderia panacihumi|DCY115|taxon:2008447 90.374 1496 129 15 8 0.0 1951 RAST2:fig|6666666.412460.rna.59 NR_041719.1|Burkholderia stabilis|LMG 14294|taxon:95485 90.428 1494 124 19 14 0.0 1949 RAST2:fig|6666666.412460.rna.59 NR_104975.1|Burkholderia anthina|W92B|taxon:179879 90.463 1489 125 17 12 0.0 1949 RAST2:fig|6666666.412460.rna.59 NR_113964.1|Paraburkholderia ginsengisoli|NBRC 100965|NBRC:100965 90.903 1462 118 15 9 0.0 1949 RAST2:fig|6666666.412460.rna.59 NR_136495.1|Burkholderia stagnalis|LMG 28156|taxon:1503054 90.470 1490 123 19 14 0.0 1949 RAST2:fig|6666666.412460.rna.59 NR_178419.1|Paraburkholderia fynbosensis|WSM4178|taxon:1200993 90.314 1497 132 13 6 0.0 1949 RAST2:fig|6666666.412460.rna.59 NR_180487.1|Paraburkholderia acidisoli|DHF22|taxon:2571748 90.381 1497 124 20 15 0.0 1949 RAST2:fig|6666666.412460.rna.59 NR_029358.1|Burkholderia multivorans|Struelens; LMG 13010|taxon:87883 90.560 1483 121 19 14 0.0 1945 RAST2:fig|6666666.412460.rna.59 NR_025057.1|Paraburkholderia caledonica|LMG 19076|taxon:134536 90.602 1479 122 17 10 0.0 1945 RAST2:fig|6666666.412460.rna.59 NR_118985.1|Robbsia andropogonis|ATCC 23061|taxon:28092 91.283 1434 106 19 12 0.0 1945 RAST2:fig|6666666.412460.rna.59 NR_152632.1|Burkholderia singularis|LMG 28154|taxon:1503053 90.463 1489 123 19 12 0.0 1945 RAST2:fig|6666666.412460.rna.59 NR_041288.1|Paraburkholderia ginsengisoli|KMY03|taxon:311231 90.947 1458 115 17 11 0.0 1945 RAST2:fig|6666666.412460.rna.59 NR_029209.1|Burkholderia cepacia|717; ATCC 25416|taxon:292 91.016 1447 120 10 8 0.0 1943 RAST2:fig|6666666.412460.rna.59 NR_029210.1|Burkholderia pyrrocinia|2327; LMG 14191|taxon:60550 91.028 1449 116 14 12 0.0 1943 RAST2:fig|6666666.412460.rna.59 NR_040803.1|Ralstonia syzygii|ATCC 49543|taxon:28097 89.914 1517 133 20 10 0.0 1943 RAST2:fig|6666666.412460.rna.59 NR_041725.1|Burkholderia mallei|ATCC 23344|ATCC:23344 90.355 1493 127 17 12 0.0 1943 RAST2:fig|6666666.412460.rna.59 NR_134010.1|Comamonas serinivorans|SP-35|taxon:1082851 92.291 1375 97 9 9 0.0 1943 RAST2:fig|6666666.412460.rna.59 NR_025080.1|Comamonas denitrificans|123; ATCC 700936|taxon:117506 91.073 1445 116 13 8 0.0 1941 RAST2:fig|6666666.412460.rna.59 NR_042901.1|Paraburkholderia phenoliruptrix|AC1100|taxon:252970 90.390 1488 128 15 9 0.0 1941 RAST2:fig|6666666.412460.rna.59 NR_170526.1|Pandoraea iniqua|LMG 31009|taxon:2508288 90.473 1480 126 15 10 0.0 1941 RAST2:fig|6666666.412460.rna.59 NR_180691.1|Paraburkholderia polaris|RP-4-7|taxon:2728848 90.772 1463 122 13 7 0.0 1941 RAST2:fig|6666666.412460.rna.59 NR_036812.1|Pandoraea norimbergensis|R2; DSM 11628|taxon:93219 90.200 1500 128 19 14 0.0 1938 RAST2:fig|6666666.412460.rna.59 NR_156098.1|Paraburkholderia ribeironis|STM 7296|taxon:1247936 91.170 1427 120 6 3 0.0 1936 RAST2:fig|6666666.412460.rna.59 NR_180943.1|Paraburkholderia polaris|RP-4-7|taxon:2728848 90.668 1468 120 17 11 0.0 1936 RAST2:fig|6666666.412460.rna.59 NR_134828.1|Variovorax guangxiensis|GXGD002|taxon:1775474 92.381 1365 92 12 9 0.0 1934 RAST2:fig|6666666.412460.rna.59 NR_159181.1|Quisquiliibacterium transsilvanicum|CGI-09|taxon:1549638 90.790 1455 123 11 5 0.0 1934 RAST2:fig|6666666.412460.rna.59 NR_171482.1|Trinickia dinghuensis|DHOM06|taxon:2291023 90.241 1496 125 21 14 0.0 1934 RAST2:fig|6666666.412460.rna.59 NR_179421.1|Acidovorax cavernicola|1011MAR4D40,2|taxon:1675792 91.213 1434 106 20 14 0.0 1932 RAST2:fig|6666666.412460.rna.59 NR_159299.1|Burkholderia puraquae|CAMPA 1040|taxon:1904757 91.113 1429 121 6 4 0.0 1930 RAST2:fig|6666666.412460.rna.59 NR_180770.1|Cupriavidus cauae|MKL-01|taxon:2608999 90.344 1481 127 16 11 0.0 1929 RAST2:fig|6666666.412460.rna.59 NR_027554.1|Paraburkholderia tuberum STM678|STM678|taxon:491071 90.303 1485 125 19 12 0.0 1927 RAST2:fig|6666666.412460.rna.59 NR_157007.1|Noviherbaspirillum denitrificans|TSA40|taxon:1968433 90.642 1464 118 19 15 0.0 1927 RAST2:fig|6666666.412460.rna.59 NR_145892.1|Simplicispira piscis|RSG39|taxon:1332263 91.613 1407 99 19 14 0.0 1927 RAST2:fig|6666666.412460.rna.59 NR_025656.1|Paraburkholderia hospita|LMG 20598|taxon:169430 90.108 1486 135 12 6 0.0 1925 RAST2:fig|6666666.412460.rna.59 NR_025138.1|Cupriavidus basilensis|DSM 11853|taxon:68895 90.182 1487 132 14 9 0.0 1925 RAST2:fig|6666666.412460.rna.59 NR_029199.1|Paraburkholderia xenovorans LB400|LB400|taxon:266265 90.512 1465 127 12 6 0.0 1925 RAST2:fig|6666666.412460.rna.59 NR_043181.1|Paraburkholderia nodosa|Br3437|taxon:392320 90.331 1479 128 15 10 0.0 1925 RAST2:fig|6666666.412460.rna.59 NR_041287.1|Paraburkholderia terrae|KMY02|taxon:311230 90.353 1472 131 11 6 0.0 1923 RAST2:fig|6666666.412460.rna.59 NR_169417.1|Caballeronia ginsengisoli|Gsoil 652|taxon:2715402 90.659 1456 123 13 7 0.0 1923 RAST2:fig|6666666.412460.rna.59 NR_043872.1|Trinickia soli|GP25-8|taxon:380675 90.223 1483 131 14 8 0.0 1923 RAST2:fig|6666666.412460.rna.59 NR_026477.1|Propionivibrio dicarboxylicus|CreMal1; DSM 5885|taxon:83767 90.114 1497 122 26 18 0.0 1921 RAST2:fig|6666666.412460.rna.59 NR_113629.1|Burkholderia gladioli|NBRC 13700|NBRC:13700 90.574 1464 117 21 16 0.0 1921 RAST2:fig|6666666.412460.rna.59 NR_147381.1|Duodenibacillus massiliensis|Marseille-P2968|taxon:1852381 89.947 1502 131 20 15 0.0 1921 RAST2:fig|6666666.412460.rna.59 NR_181310.1|Noviherbaspirillum pedocola|DKR-6|taxon:2801341 90.505 1464 123 16 11 0.0 1919 RAST2:fig|6666666.412460.rna.59 NR_116103.1|Pusillimonas ginsengisoli|DCY25|taxon:453575 90.283 1482 121 23 16 0.0 1917 RAST2:fig|6666666.412460.rna.59 NR_118629.1|Burkholderia thailandensis|BD10-00323|taxon:57975 90.505 1464 122 17 12 0.0 1917 RAST2:fig|6666666.412460.rna.59 NR_114117.1|Paraburkholderia caledonica|NBRC 102488|NBRC:102488 90.499 1463 122 17 10 0.0 1916 RAST2:fig|6666666.412460.rna.59 NR_115187.1|Pandoraea norimbergensis|CCUG 39188|taxon:93219 90.431 1463 127 13 8 0.0 1914 RAST2:fig|6666666.412460.rna.59 NR_145902.1|Paraburkholderia dipogonis|DL7|taxon:1211383 91.108 1417 120 6 3 0.0 1914 RAST2:fig|6666666.412460.rna.59 NR_156097.1|Paraburkholderia piptadeniae|STM 7183|taxon:1701573 90.966 1428 119 10 6 0.0 1914 RAST2:fig|6666666.412460.rna.59 NR_115684.1|Thiomonas bhubaneswarensis|S10|taxon:339866 90.727 1445 118 16 12 0.0 1912 RAST2:fig|6666666.412460.rna.59 NR_163660.1|Parvibium lacunae|KMB9|taxon:1888893 91.655 1390 103 13 9 0.0 1912 RAST2:fig|6666666.412460.rna.59 NR_025788.1|Thiomonas intermedia|ATCC 15466|taxon:926 92.183 1356 98 8 7 0.0 1910 RAST2:fig|6666666.412460.rna.59 NR_043152.1|Ralstonia pickettii|ATCC 27511|taxon:329 89.967 1495 128 22 13 0.0 1910 RAST2:fig|6666666.412460.rna.59 NR_148635.1|Comamonas piscis|CN1|taxon:1562974 91.043 1429 107 21 16 0.0 1910 RAST2:fig|6666666.412460.rna.59 NR_164934.1|Cupriavidus lacunae|S23|taxon:2666307 90.259 1468 131 12 7 0.0 1910 RAST2:fig|6666666.412460.rna.59 NR_043249.1|Denitratisoma oestradiolicum|AcBE2-1|taxon:311182 89.940 1491 134 16 9 0.0 1908 RAST2:fig|6666666.412460.rna.59 NR_114491.1|Burkholderia cepacia ATCC 25416|ATCC 25416|ATCC:25416 90.375 1465 124 17 12 0.0 1908 RAST2:fig|6666666.412460.rna.59 NR_125500.1|Caballeronia udeis|Hg2|taxon:1232866 90.466 1458 123 16 10 0.0 1908 RAST2:fig|6666666.412460.rna.59 NR_175486.1|Paraburkholderia flava|LD6|taxon:2547393 90.169 1475 132 13 7 0.0 1908 RAST2:fig|6666666.412460.rna.59 NR_044040.1|Ralstonia solanacearum|K60-1|taxon:305 89.900 1495 131 20 10 0.0 1906 RAST2:fig|6666666.412460.rna.59 NR_117261.1|Pusillimonas soli|MJ07|taxon:659016 91.181 1406 120 4 4 0.0 1906 RAST2:fig|6666666.412460.rna.59 NR_165707.1|Paraburkholderia lacunae|S27|taxon:2211104 90.404 1459 126 14 8 0.0 1906 RAST2:fig|6666666.412460.rna.59 NR_178873.1|Pelocola oligotropha|An3-4|taxon:1795373 90.450 1466 111 29 22 0.0 1905 RAST2:fig|6666666.412460.rna.59 NR_113645.1|Burkholderia cepacia|NBRC 14074|NBRC:14074 90.287 1462 125 17 12 0.0 1903 RAST2:fig|6666666.412460.rna.59 NR_113963.1|Paraburkholderia terrae|NBRC 100964|NBRC:100964 90.329 1458 130 11 6 0.0 1903 RAST2:fig|6666666.412460.rna.59 NR_112884.1|Paraburkholderia oxyphila NBRC 105797|OX-01|taxon:1218083 90.391 1457 127 13 8 0.0 1903 RAST2:fig|6666666.412460.rna.59 NR_136833.1|Paraburkholderia metalliresistens|D414|taxon:1398664 90.694 1440 119 15 10 0.0 1903 RAST2:fig|6666666.412460.rna.59 NR_027607.1|Cupriavidus metallidurans CH34|CH34|taxon:266264 89.754 1503 128 26 21 0.0 1901 RAST2:fig|6666666.412460.rna.59 NR_116008.1|Pandoraea thiooxydans|ATSB16|taxon:445709 91.912 1360 106 4 2 0.0 1899 RAST2:fig|6666666.412460.rna.59 NR_180929.1|Noviherbaspirillum galbum|17J57-3|taxon:2709383 90.123 1468 129 16 10 0.0 1893 RAST2:fig|6666666.412460.rna.59 NR_112887.1|Paraburkholderia oxyphila NBRC 105797|OX-01|taxon:1218083 90.254 1457 129 13 8 0.0 1892 RAST2:fig|6666666.412460.rna.59 NR_115279.1|Bordetella ansorpii|SMC-8986|taxon:288768 90.756 1428 117 15 12 0.0 1892 RAST2:fig|6666666.412460.rna.59 NR_180198.1|Chromobacterium phragmitis|IIBBL 112-1|taxon:2202141 89.047 1543 145 24 15 0.0 1892 RAST2:fig|6666666.412460.rna.59 NR_159311.1|Paraburkholderia azotifigens|NF2-5-3|taxon:2057004 90.241 1455 131 11 5 0.0 1890 RAST2:fig|6666666.412460.rna.59 NR_117675.1|Annwoodia aquaesulis|DSM 4255|taxon:47959 89.179 1534 139 27 23 0.0 1888 RAST2:fig|6666666.412460.rna.59 NR_113877.1|Cupriavidus numazuensis NBRC 100056|NBRC 100056|NBRC:100056 90.137 1460 130 14 10 0.0 1886 RAST2:fig|6666666.412460.rna.59 NR_112886.1|Paraburkholderia oxyphila NBRC 105797|OX-01|taxon:1218083 90.185 1457 130 13 8 0.0 1886 RAST2:fig|6666666.412460.rna.59 NR_029099.2|Chitinimonas taiwanensis|cf; LMG 22011|taxon:240412 89.269 1519 143 20 13 0.0 1884 RAST2:fig|6666666.412460.rna.59 NR_181167.1|Massilia horti|ONC3|taxon:2562153 90.800 1413 124 6 5 0.0 1884 RAST2:fig|6666666.412460.rna.59 NR_043250.1|Advenella mimigardefordensis DPN7|DPN7|taxon:1247726 89.502 1505 135 23 10 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_136496.1|Burkholderia territorii|LMG 28158|taxon:1503055 90.325 1447 123 17 12 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_137235.1|Paraburkholderia rhizosphaerae|WR43|taxon:480658 91.006 1401 118 8 6 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_147401.1|Sutterella massiliensis|Marseille-P2435|taxon:1816689 89.481 1502 139 19 12 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_157990.1|Pigmentiphaga aceris|SAP-32|taxon:1940612 90.423 1441 123 15 12 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_180939.1|Paraburkholderia antibiotica|G-4-1-8|taxon:2728839 89.946 1472 130 18 12 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_181900.1|Chromobacterium sinusclupearum|MWU13-2610|taxon:2077146 89.055 1535 144 24 15 0.0 1882 RAST2:fig|6666666.412460.rna.59 NR_024855.1|Propionivibrio pelophilus|asp 66; DSM 12018|taxon:65401 89.752 1493 121 32 23 0.0 1881 RAST2:fig|6666666.412460.rna.59 NR_114128.1|Cupriavidus metallidurans|NBRC 102507|NBRC:102507 90.082 1462 127 18 13 0.0 1881 RAST2:fig|6666666.412460.rna.59 NR_112888.1|Paraburkholderia oxyphila NBRC 105797|OX-01|taxon:1218083 90.117 1457 131 13 8 0.0 1881 RAST2:fig|6666666.412460.rna.59 NR_113024.1|Paraburkholderia acidipaludis NBRC 101816|NBRC 101816|taxon:1218074 90.068 1460 130 15 10 0.0 1879 RAST2:fig|6666666.412460.rna.59 NR_116134.1|Acidovorax cattleyae|CIP 106435|taxon:80868 92.494 1319 89 10 9 0.0 1879 RAST2:fig|6666666.412460.rna.59 NR_116132.1|Acidovorax facilis|LMG 2193|taxon:12917 92.441 1323 86 14 11 0.0 1877 RAST2:fig|6666666.412460.rna.59 NR_025280.1|Castellaniella defragrans|54Pin; DSM 12141|taxon:75697 89.644 1487 134 20 11 0.0 1875 RAST2:fig|6666666.412460.rna.59 NR_112885.1|Paraburkholderia oxyphila NBRC 105797|OX-01|taxon:1218083 90.048 1457 132 13 8 0.0 1875 RAST2:fig|6666666.412460.rna.59 NR_178636.1|Paraburkholderia insulsa|PNG-April|taxon:1441714 91.138 1388 115 8 6 0.0 1875 RAST2:fig|6666666.412460.rna.59 NR_028965.1|Paraburkholderia tropica|Ppe8; ATCC BAA-831|taxon:92647 91.000 1400 111 15 10 0.0 1873 RAST2:fig|6666666.412460.rna.59 NR_116133.1|Acidovorax avenae|CIP 106500|taxon:80867 92.418 1319 90 10 9 0.0 1873 RAST2:fig|6666666.412460.rna.59 NR_179209.1|Noviherbaspirillum aridicola|NCCP-691|taxon:2849687 90.249 1446 122 19 15 0.0 1873 RAST2:fig|6666666.412460.rna.59 NR_043167.1|Paraburkholderia mimosarum|PAS44|taxon:312026 90.903 1396 123 4 2 0.0 1871 RAST2:fig|6666666.412460.rna.59 NR_178601.1|Paraburkholderia monticola|JC2948|taxon:1399968 89.836 1466 136 13 7 0.0 1869 RAST2:fig|6666666.412460.rna.59 NR_113619.1|Cupriavidus oxalaticus NBRC 13593|NBRC 13593|NBRC:13593 89.898 1465 126 22 18 0.0 1868 RAST2:fig|6666666.412460.rna.59 NR_043180.1|Paraburkholderia sabiae|Br3407|taxon:273251 89.530 1490 133 23 17 0.0 1866 RAST2:fig|6666666.412460.rna.59 NR_112950.1|Pandoraea vervacti|NS15|taxon:656178 91.232 1380 108 13 8 0.0 1866 RAST2:fig|6666666.412460.rna.59 NR_169487.1|Lampropedia aestuarii|YIM MLB12|taxon:2562762 90.754 1406 119 11 8 0.0 1866 RAST2:fig|6666666.412460.rna.59 NR_133777.1|Melaminivora alkalimesophila|CY1|taxon:1165852 90.460 1436 106 31 27 0.0 1864 RAST2:fig|6666666.412460.rna.59 NR_152633.1|Chitinimonas naiadis|AR2|taxon:1756762 89.505 1496 126 31 23 0.0 1864 RAST2:fig|6666666.412460.rna.59 NR_024882.1|Burkholderia ambifaria|AMMD|taxon:152480 89.781 1458 133 16 11 0.0 1862 RAST2:fig|6666666.412460.rna.59 NR_125506.1|Caballeronia humi|RA1-5|taxon:326474 91.014 1391 107 18 12 0.0 1860 RAST2:fig|6666666.412460.rna.59 NR_133711.1|Trinickia dabaoshanensis|GIMN1.004|taxon:564714 90.721 1401 123 7 5 0.0 1860 RAST2:fig|6666666.412460.rna.59 NR_179094.1|Burkholderia perseverans|INN12|taxon:2615214 91.422 1364 105 12 10 0.0 1860 RAST2:fig|6666666.412460.rna.59 NR_109451.1|Chromobacterium vaccinii|MWU205|taxon:1108595 88.780 1533 150 22 14 0.0 1858 RAST2:fig|6666666.412460.rna.59 NR_114126.1|Ralstonia pickettii|NBRC 102503|NBRC:102503 89.775 1467 128 22 13 0.0 1858 RAST2:fig|6666666.412460.rna.59 NR_148795.1|Paraburkholderia jirisanensis|JRM2-1|taxon:1520583 91.134 1376 114 8 6 0.0 1858 RAST2:fig|6666666.412460.rna.59 NR_040806.1|Trinickia caryophylli|ATCC 25418|taxon:28094 89.959 1454 127 19 12 0.0 1858 RAST2:fig|6666666.412460.rna.59 NR_146352.1|Paraburkholderia kirstenboschensis|Kb15|taxon:1245436 91.047 1385 108 16 7 0.0 1857 RAST2:fig|6666666.412460.rna.59 NR_025358.1|Thiobacillus denitrificans|NCIMB 9548|taxon:36861 89.013 1520 136 31 25 0.0 1853 RAST2:fig|6666666.412460.rna.59 NR_113352.1|Ralstonia pickettii|JCM 5969|taxon:329 89.754 1464 128 22 13 0.0 1853 RAST2:fig|6666666.412460.rna.59 NR_044508.1|Herminiimonas glaciei|UMB49|taxon:523788 90.585 1402 126 6 6 0.0 1853 RAST2:fig|6666666.412460.rna.59 NR_108706.1|Paraburkholderia denitrificans|KIS30-44|taxon:694025 91.042 1373 119 4 2 0.0 1851 RAST2:fig|6666666.412460.rna.59 NR_148792.1|Lampropedia cohaerens|CT6|taxon:1610491 90.708 1399 116 14 11 0.0 1851 RAST2:fig|6666666.412460.rna.59 NR_112832.1|Pandoraea oxalativorans|TA25|taxon:573737 91.068 1377 110 13 8 0.0 1849 RAST2:fig|6666666.412460.rna.59 NR_115261.1|Paraburkholderia sabiae|Br3407|taxon:273251 90.592 1403 120 12 9 0.0 1849 RAST2:fig|6666666.412460.rna.59 NR_145537.1|Paraburkholderia ginsengiterrae|DCY85|taxon:1462993 90.161 1433 124 17 11 0.0 1849 RAST2:fig|6666666.412460.rna.59 NR_027555.1|Paraburkholderia phymatum STM815|STM815|taxon:391038 90.463 1405 126 8 6 0.0 1845 RAST2:fig|6666666.412460.rna.59 NR_112951.1|Pandoraea faecigallinarum|KOx|taxon:656179 91.001 1378 111 13 8 0.0 1845 RAST2:fig|6666666.412460.rna.59 NR_025013.1|Burkholderia cenocepacia|LMG 16656|taxon:95486 90.527 1404 116 17 12 0.0 1844 RAST2:fig|6666666.412460.rna.59 NR_116131.1|Acidovorax delafieldii|LMG 5943|taxon:47920 92.000 1325 88 18 15 0.0 1844 RAST2:fig|6666666.412460.rna.59 NR_178625.1|Zoogloea oleivorans|Buc|taxon:1552750 90.153 1442 106 36 25 0.0 1844 RAST2:fig|6666666.412460.rna.59 NR_114460.1|Cupriavidus gilardii|LMG 5886|taxon:82541 89.810 1423 136 9 7 0.0 1842 RAST2:fig|6666666.412460.rna.59 NR_044555.1|Thiobacillus thiophilus|D24TN|taxon:543892 89.037 1505 138 27 19 0.0 1840 RAST2:fig|6666666.412460.rna.59 NR_164971.1|Paraburkholderia strydomiana|WK1.1f|taxon:1245417 91.163 1358 112 8 5 0.0 1836
dr-joe-wirth
commented
1 year ago Thanks for that, but can you please send that file as an attachment? Copying and pasting has removed important formatting that I cannot easily restore.
thisisliuqing
commented
1 year ago I think the problem was related to docker. I deleted docker in my computer and re-run phantasm. Now it seems OK. It's starting the next step "Mapping blast hits onto the taxonomy ..." Thank you again for this wonderful program.
dr-joe-wirth
commented
1 year ago I'm glad it is working. I will still work to resolve this issue.
thisisliuqing
commented
1 year ago query.16SrRNA.blastn.txt The file was attached.
dr-joe-wirth
commented
1 year ago There was an issue in PHANTASM.taxonomy.Taxonomy.__processSiblings that will be resolved with the release of version 1.0.4. Marking this issue as closed.
thisisliuqing
commented
1 year ago Thank you!
Phantasm is a great program for taxonomy! When I try to test phantasm, I got the following error. I would appreciate if you could tell me possible solutions.
Constructing the subject 16S rRNA fasta file ...Done. Mlaking blast database from '/mnt/d/ubuntu/data/24546/initialAnalysis/16S/prok.16SrRNA.fna ... Done. Using blastn to search for related 16S rRNA gene sequences ... Done. Constructing taxonomy for the query genome(s)Identifying order(s) represented in the blast results ... Done.Importing data from NCBI Taxonomy for 2 orders:Burkholderiales (taxid: 80840) ... Done.Neisseriales (taxid: 206351)... Done.Reconciling taxonomy with LPSN taxonomy ...Traceback (most recent call last):
File"/mnt/d/ubuntu/soft/phantasm/phantasm.py”line 197.ingetPhyloMarker(gbffL, param0)File "/mnt/d/ubuntu/soft/phantasm/PHANTASM/main.py”，line 25，in getPhyloMarkeroutgroup = taxonomyWrapper(allQueryGenbanksL， param0 1)
File "/mnt/d/ubuntu/soft/phantasm/PHANTASM/main.py”， line 81，in taxonomyWrapperdir=param0 1.workdir)tax0 = constructTaxonomy(taxids.saveTax=True.
File "/mnt/d/ubuntu/soft/phantasm/PHANTASM/taxonomy/taxonomyConstruction. py. line 53. in constructlaxonomyorder.addlpsnData(lpsnD)
File "/mnt/d/ubuntu/soft/phantasm/PHANTASM/taxonomy/Taxonomy.py",File"line 2113,in addLpsnDataself.processSiblings(lpsnD)
File "/mnt/d/ubuntu/soft/phantasm/PHANTASM/taxonomy/Taxonomy.py”,line 2402，inprocessSiblingsTaxonomy.mergeMultipleRoots([parent,siblingParent]， lpsnD)
File "/mnt/d/ubuntu/soft/phantasm/PHANTASM/taxonomy/Taxonomy.py”, line 1312,in mergeMultipleRootsraise AttributeError(ERR 1)
AttributeError: Al] Taxonomy objects in the list must be at their root