Conversion stops at CreateMultiMarkers if neither BoundingBox nor Curve are set

draeger-lab / EscherConverter

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

https://draeger-lab.github.io/EscherConverter/

MIT License

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Conversion stops at CreateMultiMarkers if neither BoundingBox nor Curve are set #44

Open MariaHei opened 5 years ago

MariaHei commented 5 years ago

When converting the file GlycolysisLayout_small.sbml.xml from data the conversion stops at edu.ucsd.sbrg.escher.converter.SBML2Escher createMultiMarkers --- INFORMATION: creating multi-markers from species reference glyph (SpeciesReferenceGlyph_01). This is probably because in this SpeciesReferenceGlyph BoundingBox is not set and while isSetCurve = true, getCurve = [] .

MariaHei commented 5 years ago

Trying to solve this has lead to many more problems so I leave it this way for now. For anyone in the future working on this: the problem is in edu.ucsd.sbrg.escher.converter.SBML2Escher.createMultiMarkers. The number of curve segments is only 1 sometimes which leads to a for-loop from i = 0 with i < 0.