Closed alexander-alleman closed 2 years ago
Hi @alexander-alleman and sorry for the very late response, I did not get notifications for issues for quite some time and have not actively been working on this project since I started a new job.
The issues with your command seems to be -v
:
This should rather look like -v <path to folder containing models>:<path in container>
so in your case -v /home/alex/ModelPolisher/models:/models
To elaborate on this a little, the argument -v <local directory>:<container directory>
accomplishes a docker volume mapping which is necessary for the container to manipulate files on your local system (from which it is isolated by default).
I hope you were able to resolve your issue, @alexander-alleman - could you maybe give a quick notice about it, so as to decide whether this issue can be closed?
I am closing this as it does not appear to be an issue anymore.
I don't know if something is wrong with my command setup or this is a java issue but I get: java.io.IOException: Could not open file at '/models/e_coli_core.xml'
I have tried this with multiple sbml models. I am using the ubuntu app on windows 10.
Here is my command
I have the model.xml file in the ModelPolisher folder and a models folder
Thanks for the help
-Alex