Closed mephenor closed 4 years ago
Should be fixed in the refactoring branch and already merged into master, if I am not mistaken. Need to check possible input parameter combinations for null pointer issues, however.
This issue is closed and at least the parameter combination seems to work fine for me. I'm closing the issue for the November 2019 and forward project.
The parameter combination
--annotate-with-bigg=true --add-adb-annotations=false
was reported to currently throwedu.ucsd.sbrg.bigg.AnnotateDB getAnnotations --- WARNING: The connection attempt failed
. Additionally models don't seem to get much annotation. This needs to be investigated and code touching AnnotateDB needs to be revisited.