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draeger-lab / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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SBML TestSuite failing test semantic/01488/01488 `java.lang.ArithmeticException: arcsech(0) undefined` #38

Closed matthiaskoenig closed 4 years ago

matthiaskoenig commented 4 years ago

Test fails due to: java.lang.ArithmeticException: arcsech(0) undefined

java.lang.ArithmeticException: arcsech(0) undefined

    at org.sbml.jsbml.util.Maths.arcsech(Maths.java:145)
    at org.simulator.sbml.astnode.ASTNodeInterpreter.arcsech(ASTNodeInterpreter.java:727)
    at org.simulator.sbml.astnode.ASTNodeValue.computeDoubleValue(ASTNodeValue.java:408)
    at org.simulator.sbml.astnode.ASTNodeValue.compileDouble(ASTNodeValue.java:284)
    at org.simulator.sbml.astnode.ASTNodeInterpreter.functionDouble(ASTNodeInterpreter.java:192)
    at org.simulator.sbml.astnode.FunctionValue.computeDoubleValue(FunctionValue.java:121)
    at org.simulator.sbml.astnode.ASTNodeValue.compileDouble(ASTNodeValue.java:284)
    at org.simulator.sbml.astnode.ASTNodeInterpreter.functionDouble(ASTNodeInterpreter.java:190)
    at org.simulator.sbml.astnode.FunctionValue.computeDoubleValue(FunctionValue.java:121)
    at org.simulator.sbml.astnode.ASTNodeValue.compileDouble(ASTNodeValue.java:284)
    at org.simulator.sbml.astnode.RuleValue.processAssignmentVariable(RuleValue.java:128)
    at org.simulator.sbml.astnode.AssignmentRuleValue.processRule(AssignmentRuleValue.java:102)
    at org.simulator.sbml.SBMLinterpreter.processRules(SBMLinterpreter.java:2511)
    at org.simulator.sbml.SBMLinterpreter.init(SBMLinterpreter.java:1475)
    at org.simulator.sbml.SBMLinterpreter.<init>(SBMLinterpreter.java:564)
    at org.simulator.sbml.SBMLTestSuiteTest.testModel(SBMLTestSuiteTest.java:144)
    at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
    at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
    at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
    at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
    at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
    at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
    at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
    at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
    at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
    at org.junit.runners.Suite.runChild(Suite.java:127)
    at org.junit.runners.Suite.runChild(Suite.java:26)
    at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
    at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
    at org.junit.runners.Suite.runChild(Suite.java:127)
    at org.junit.runners.Suite.runChild(Suite.java:26)
    at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
    at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
    at org.junit.runner.JUnitCore.run(JUnitCore.java:160)
    at com.intellij.junit4.JUnit4IdeaTestRunner.startRunnerWithArgs(JUnit4IdeaTestRunner.java:68)
    at com.intellij.rt.execution.junit.IdeaTestRunner$Repeater.startRunnerWithArgs(IdeaTestRunner.java:47)
    at com.intellij.rt.execution.junit.JUnitStarter.prepareStreamsAndStart(JUnitStarter.java:242)
    at com.intellij.rt.execution.junit.JUnitStarter.main(JUnitStarter.java:70)
hemilpanchiwala commented 4 years ago

@matthiaskoenig, this issue is resolved now so we can close it now.

draeger commented 4 years ago

@hemilpanchiwala when stating that a problem is solved, could you please directly provide the link to the commit? Thanks!

hemilpanchiwala commented 4 years ago

@hemilpanchiwala when stating that a problem is solved, could you please directly provide the link to the commit? Thanks!

@draeger, as we discussed in the last meeting, it was solved without any change so maybe I did some mistake before in testing. So, no commit to link here.

draeger commented 4 years ago

Ok, should we close the issue now?