The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
As the new SBML Level 3 Version 2 models now allow for reactions without reactants and products, this support has to be added to the SBSCL simulator. Currently, the simulation fails with a warning by giving NaN values in results.
The result after simulating the test case 1300 from SBML Test Suite:
WARN (SBMLCoreParser.java:477) - The reaction 'J0' does neither contain any reactants nor products.
[Time] [0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [p1], [NaN], [NaN], [NaN], [NaN], [NaN], [NaN], [NaN], [NaN], [NaN], [NaN], [NaN]]
A similar problem exists for test case 1301 and 1302.
As the new SBML Level 3 Version 2 models now allow for reactions without reactants and products, this support has to be added to the SBSCL simulator. Currently, the simulation fails with a warning by giving NaN values in results.
The result after simulating the test case 1300 from SBML Test Suite:
A similar problem exists for test case 1301 and 1302.