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draeger-lab / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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SBML L3V2 tests failing with no identified reason yet #47

Closed hemilpanchiwala closed 4 years ago

hemilpanchiwala commented 4 years ago

Currently, for the SBML L3V2 models from the SBML Test Suite, about 69 tests are failing (ignoring the comp models). Some of them are failing due to some reasons (issues are opened for them separately), but this issue contains the test cases for which there is currently no reason for failing (deviating from the pre-defined results of the SBML Test Suite).

Here's the list (test case number of the models from the SBML Test Suite develop branch):

1208, 1454, 1480 (Seems to be a delay issue here also but not sure), 1520 (Seems trigger issue but not sure), 1575, 1583, 1589, 1626, 1754, 1758, 1759.

All the above models can be found here. (just provide the test case number)

I see that most models failing contains either delay or trigger or rateRule.

hemilpanchiwala commented 4 years ago

@matthiaskoenig, as described by you in the meeting, I have added all the failed tests here.