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drieslab / Giotto

Spatial omics analysis toolbox
https://drieslab.github.io/Giotto_website/
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libmagick missing in docker image #159

Closed rvanguri closed 1 year ago

rvanguri commented 2 years ago

Hi,

I pulled the latest docker image delron01/giotto:latest and it seems that libMagick is missing:

visium = createGiottoVisiumObject(visium_dir = data_path, expr_data = 'raw', png_name = 'tissue_lowres_image.png', gene_column_index = 2, instructions = instrs)

A structured visium directory will be used Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/lib/R/site-library/magick/libs/magick.so': libMagick++-6.Q16.so.8: cannot open shared object file: No such file or directory

Any help would be appreciated, thanks!

RubD commented 1 year ago

I believe this is not an issue anymore in the more recent versions of Giotto and the docker image.