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drieslab / Giotto

Spatial omics analysis toolbox
https://drieslab.github.io/Giotto_website/
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Error with Nanostring CosMx Subcellular Lung Cancer example: Error in calculateOverlapRaster #564

Closed khumarahn closed 1 year ago

khumarahn commented 1 year ago

Hi! Trying to literally follow the Nanostring CosMx Subcellular Lung Cancer example. It fails in Section 6 with

Error in calculateOverlapRaster(fov_join, feat_info = "neg_probe") : 
  trying to get slot "spatVector" from an object of a basic class ("NULL") with no slots
Execution halted

Here is the complete output: test.txt

Using a fresh installation of giotto in R-4.2.1

RubD commented 1 year ago

Hi @khumarahn can you try it again with our suite_dev branch? This should be solved.

mattobny commented 1 year ago

@khumarahn This should be fixed. The tutorial has been fixed as of the version bump to v3.3. Please open a new issue if necessary and we will gladly assist you!