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drieslab / Giotto

Spatial omics analysis toolbox
https://drieslab.github.io/Giotto_website/
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Error in DWLS deconvolution result with Pie plots #947

Closed Umaarasu closed 3 weeks ago

Umaarasu commented 2 months ago

Hi,

I have not been able to run this below command. Is there a way to solve this?

spatDeconvPlot(visium, show_image = T, radius = 250, save_param = list(save_name = "spat_DWLS_pie_plot"))

Error in gimage@mg_object[[1]] : object of type 'externalptr' is not subsettable

Thanks!

RubD commented 2 months ago

If you set show_image = F it will probably work. It looks like a problem with the image attached to this giotto object. Is this from a saved giotto object and do you use the functions saveGiotto and loadGiotto?

Umaarasu commented 2 months ago

@RubD No, this not a saved Giotto object. Thanks, changing to 'F' works.