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drieslab / Giotto

Spatial omics analysis toolbox
https://drieslab.github.io/Giotto_website/
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seuratToGiottoV5 #975

Closed worthing1016 closed 3 months ago

worthing1016 commented 3 months ago

Describe the Error When I am using the seuratToGiottoV5() function, I encountered the following error. I am using Seurat version 5.1.0, and I would like to know how to resolve this issue

Error Message

Error in seuratToGiottoV5(sobject, spatial_assay = "Spatial", dim_reduction = c("pca", "umap"), subcellular_assay = "Vizgen", sp_network = NULL, nn_network = NULL, verbose = TRUE): there is no function "seuratToGiottoV5"

- R 4.4.1
- Giotto

Additional context 微信截图_20240704142633

Add any other context about the problem here.

iqraAmin commented 3 months ago

Hi @worthing1016,

Could you please provide me with your session info? Also, if possible, could you provide a subset of your data so I can reproduce the error?

Thanks!

worthing1016 commented 3 months ago

Hi @worthing1016,

Could you please provide me with your session info? Also, if possible, could you provide a subset of your data so I can reproduce the error?

Thanks!

Thank you very much for your reply. I have already resolved the issue. It was caused by my Giotto version being too low