Install error: error in `stop_task_build(state, worker)`

[GBeattie]

Hi,

I've just tried installing Giotto, however an issue arose when it came to install GiottoUtils, I tried a standalone installation and got the same error:

> pak::pak("drieslab/GiottoUtils")

→ Will install 1 package.
→ Will download 1 package with unknown size.
+ GiottoUtils   0.1.7 👷🔧 ⬇ (GitHub: ee53192)
ℹ Getting 1 pkg with unknown size
✔ Cached copy of GiottoUtils 0.1.7 (source) is the latest build
✔ No downloads needed, all packages are cached
ℹ Building GiottoUtils 0.1.7
✖ Failed to build GiottoUtils 0.1.7 (708ms)                          
Error:                                                               
! error in pak subprocess
Caused by error in `stop_task_build(state, worker)`:
! Failed to build source package GiottoUtils.
Type .Last.error to see the more details.

And here is the session info immediately after running he above:

R version 4.1.0 (2021-05-18)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS 12.5.1

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] processx_3.5.2  compiler_4.1.0  R6_2.5.0        cli_3.0.1       tools_4.1.0     rstudioapi_0.14
[7] callr_3.7.0     ps_1.6.0        pak_0.7.2      

Thanks in advance for any assistance!

[jiajic]

Hi @GBeattie,

Could you give it another try? I think it might have been fixed after #80 was merged.

Thanks, George

[GBeattie]

Thanks @jiajic, GiottoUtils now installing fine, unfortunately getting the same error now with terra, I'll raise an issue with them.

> # Ensure Giotto Suite is installed.
> if(!"Giotto" %in% installed.packages()) {
+   pak::pkg_install("drieslab/Giotto")
+ }

→ Will install 4 packages.
→ Will update 1 package.
→ Will download 4 packages with unknown size.
+ Giotto                4.0.6  👷‍♀️🔧 ⬇ (GitHub: 621cde5)
+ GiottoClass           0.3.0  👷🏾🔧 ⬇ (GitHub: a7bf852)
+ GiottoUtils           0.1.7  👷🏼‍♀️🔧 ⬇ (GitHub: f22b075)
+ GiottoVisuals         0.2.0  👷🏼🔧 ⬇ (GitHub: 73907f7)
+ terra         1.6-7 → 1.7-71 👷🏽‍♂️🔧
? Do you want to continue (Y/n) Y
ℹ Getting 4 pkgs with unknown sizes, 1 (836.57 kB) cached
✔ Got GiottoUtils 0.1.7 (source) (129.56 kB)                                                          
✔ Got GiottoVisuals 0.2.0 (source) (420.95 kB)                                                       
✔ Got Giotto 4.0.6 (source) (653.22 kB)                                                 
✔ Got GiottoClass 0.3.0 (source) (1.03 MB)                                
✔ Downloaded 4 packages (2.23 MB) in 4.5s                                
ℹ Packaging GiottoUtils 0.1.7
ℹ Building terra 1.7-71
✔ Packaged GiottoUtils 0.1.7 (1.5s)                                               
ℹ Building GiottoUtils 0.1.7                                                      
✖ Failed to build terra 1.7-71 (4.1s)                                             
Error:                                                                            
! error in pak subprocess
Caused by error in `stop_task_build(state, worker)`:
! Failed to build source package terra.
Type .Last.error to see the more details.