Closed arschat closed 1 year ago
Problem resolved with update of bioconductor from version 3.14 to version 3.16
BiocManager::install(version = "3.16")
and reinstalled Giotto@suite branch
devtools::install_github("drieslab/Giotto@suite")
Thanks for the package!
Thanks @arschat for providing feedback and a timely update!
In the Nanostring CosMx tutorial, the
createGiottoObjectSubcellular
function that is called in cell 3, is not exported from the Giotto@suite that is installed in the beginning. docs/source/subsections/datasets/Nanostring_Lung12_jan26_21.rstAlso, there is a typo in the branch name specification in _installgithub call, in the repo, "suite" has lowercase s.