spatialData/spatialCoords arguments in constructor

[lmweber]

Now that we have both spatialData and spatialCoords accessors, we should also think about consistency for the SpatialExperiment constructor.

E.g. spatialCoords accessor returns a matrix, but spatialCoords argument in the constructor accepts a DataFrame.

Maybe one option is to simply replace the argument in the constructor, so have an argument spatialData instead of spatialCoords:

SpatialExperiment(
  ...,
  sample_id = "Sample01",
  spatialData = NULL,
  scaleFactors = 1,
  imageSources = NULL,
  image_id = NULL,
  loadImage = TRUE,
  imgData = NULL
)

[drighelli]

You're right, I forgot to correct that argument!

[lmweber]

Update from today's testing:

• spatialData accessor is now working
• argument name in constructor needs to be changed from spatialCoords to spatialData

Thanks!

[drighelli]

done