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drisso / zinbwave

Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
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ZinbWave + RSEC error #42

Closed siyao-liu closed 5 years ago

siyao-liu commented 5 years ago

Hello,

I'm trying to run RSEC() on a W matrix (50 genes and 12170 cells) derived from ZinbWave. I got the error as below:

Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘primaryCluster’ for signature ‘"NULL"’

I also found a previous post on github related to this issue: #182

However, the issue was with the clusterMany() function. I wonder if the issue with the RSEC() function has also something to do with the memory? I tried adding the argument "largeDataset=TRUE" in the RSEC() function but it didn't solve the problem. Can anyone help? Thanks very much!

drisso commented 5 years ago

This is duplicated, continue at https://github.com/epurdom/clusterExperiment/issues/263