Open ambertrujillo opened 2 years ago
You are getting this error because your Cluster9
input count matrix has samples with all zero counts. Remember samples are columns not rows in the count matrix, so you should check with table(colSums(assay(Cluster9)) == 0)
. You need to filter out both samples columns with all zero counts and genes rows with all zero counts from your count matrix before using it with zinbwave.
Hello there and thank you in advance for your help!
I am running zinbwave on a single cell dataset with many 0s. The following is my code and error:
I get the following error:
However, when I check the rowSums there doesn't appear to be any rows that return 0 counts.
Any suggestions/help would be much appreciated!
Best, Amber