How do you properly write the configuration file to use the 5' primer and the random region size on the command line?
What I tried is:
"#" OPTIONAL, if not specified, we need Experiment.randomizedRegionSize
"#" Experiment.primer3 =
Experiment.randomizedRegionSize = 40
(no actual quotations used, I just didn't know how to type it here without making it a "header")
This resulted in it not processing any of the reads and not exporting anything.
Ultimately, I want to be able to parse and export the cycle files on the cluster with only the random regions of length 40.
How do you properly write the configuration file to use the 5' primer and the random region size on the command line? What I tried is:
"#" OPTIONAL, if not specified, we need Experiment.randomizedRegionSize "#" Experiment.primer3 = Experiment.randomizedRegionSize = 40 (no actual quotations used, I just didn't know how to type it here without making it a "header")
This resulted in it not processing any of the reads and not exporting anything.
Ultimately, I want to be able to parse and export the cycle files on the cluster with only the random regions of length 40.
Thank you