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drivenbyentropy / aptasuite

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
https://drivenbyentropy.github.io/
GNU General Public License v3.0
24 stars 11 forks source link

GUI v0.6.5 - Motif analysis bug #32

Closed PJpb closed 6 years ago

PJpb commented 6 years ago

Hi, The GUI produces an error when trying to display a motif analysis. I feeded it with sample data (20k sequences in two files), run the clustering and AptaMotif at alpha=2 and kmer=6. The analysis went fine (although it consumed 100% of CPU; I think that if there were more sequences to analyze the CPU would overheat over time, but it took only 3 minutes; I've got a Intel Core i7-7700HQ, so not bad for a desktop; is this normal? Can it be restricted somehow?), but when I click the analysis in the left panel nothing happens (The middle window stays blank). It seems to be caused by the float character (US "." vs European ",") again. Here are the files. console_log.txt log_2018-02-27_18-13-06.txt configuration_txt.txt

drivenbyentropy commented 6 years ago

AptaSuite makes use of parallelism as often as possible. You can control the maximal number of cores by going to Preferences -> Number of Cores and selecting a lower count.

Overheating should not be an issue on modern systems as virtually any CPU auto-throttles when the temperature hits above a critical level.

As for the issue you reported, I will look into it :+1:

drivenbyentropy commented 6 years ago

This bug is getting annoying ;-).

I have now set the locale to en_US globally for the duration of the application executing. Please let me know if this solves the issue.

New version is v0.6.7

PJpb commented 6 years ago

Works fine :)