Thanks, this is working now in fastq format. I notice that the 'primer3' option in the config file has to be the reverse complement of the reverse primer... which is not really the standard way to write primers. It might be worth putting a note on that in the manual. Cheers.
Thanks, this is working now in fastq format. I notice that the 'primer3' option in the config file has to be the reverse complement of the reverse primer... which is not really the standard way to write primers. It might be worth putting a note on that in the manual. Cheers.