Ways to make Data Import run faster

drivenbyentropy / aptasuite

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.

https://drivenbyentropy.github.io/

GNU General Public License v3.0

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Ways to make Data Import run faster #52

Closed drthanwho closed 5 years ago

drthanwho commented 5 years ago

Is there anyway to make the program and at least the Import step run any faster?

I have 80million sequences and it is of course taking days to import...

I tried to increase the memory it can use but it will not use more than 1.2GB. Is memory not making a significant change on this step or am I doing something wrong here?

drthanwho commented 5 years ago

After looking into tnis, the problem was not opening the program through powershell. And making sure you have 64bit Java installed.

After these are done the program can use 2+GB easily :smile:

drivenbyentropy commented 5 years ago

My appologies for the late reply, I was traveling. I have added this information to the Wiki so others can benefit from this knowledge as well.

Thanks for reporting this!