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drivenbyentropy / aptasuite

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
https://drivenbyentropy.github.io/
GNU General Public License v3.0
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DNA secondary structure motif analysis #58

Open meszlili96 opened 5 years ago

meszlili96 commented 5 years ago

Hi, AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSuite? All help is much appreciated in advance.

PJpb commented 5 years ago

Second that!

Bioanalytica commented 4 years ago

What about DNAshapeR?

https://bioconductor.org/packages/release/bioc/vignettes/DNAshapeR/inst/doc/DNAshapeR.html