Closed ayoshikawa closed 3 years ago
drivenbyentropy
commented
5 years ago Thank you for reporting this,
If possible, could you also attach the log file for this run? Am I correct in that you are only looking at a single selection cycle?
Thanks!
ayoshikawa
commented
5 years ago Hey there,
What is the log file, where do I find it? Is just the cmd output? In this case I am looking at a single cycle. I tried with multiple cycles before, but had the same problem.
Cheers, Alex
On Wed, Oct 24, 2018 at 5:24 PM drivenbyentropy notifications@github.com wrote:
Thank you for reporting this,
If possible, could you also attache the log file for this run? Am I correct in that you are only looking at a single selection cycle?
Thanks!
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/drivenbyentropy/aptasuite/issues/66#issuecomment-432871627, or mute the thread https://github.com/notifications/unsubscribe-auth/AHhVUmF9UGNl5bsGHX-WXvmR6JUKL0JNks5uoQSugaJpZM4X5RTP .
drivenbyentropy
commented
5 years ago Hi,
The log files are located in the log folder of the project path you chose during creation of your experiment and are named by date of execution of AptaSuite. They should be simple txt files and the one that corresponds to the run of AptaSuite causing the issue would help getting to the bottom of this.
Sorry for not being clearer before and thanks again!
ayoshikawa
commented
5 years ago Hey here is the log file. I have many more examples as well if you would like to see them.
Thanks so much for taking a look.
On Wed, Oct 24, 2018 at 6:32 PM drivenbyentropy notifications@github.com wrote:
Hi,
The log files are located in the log folder of the project path you chose during creation of your experiment and are named by date of execution of AptaSuite. They should be simple txt files and the one that corresponds to the run of AptaSuite causing the issue would help getting to the bottom of this.
Sorry for not being clearer before and thanks again!
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/drivenbyentropy/aptasuite/issues/66#issuecomment-432882564, or mute the thread https://github.com/notifications/unsubscribe-auth/AHhVUspQbiQEfe8rPdDcyq4XvgHhj4oDks5uoRSSgaJpZM4X5RTP .
System Information: Java Version: 10.0.1 JavaFX Version: null OS Name: Windows 10 OS Version: 10.0 OS Architecture: amd64 CPU cores: 8 System Memory: 266338304 Mb
AptaSuite version read from file. Version is 0.9.3
Starting New Experiment Wizard
Written Configuration file to C:\Users\Yoshi\Dropbox\Stanford\Aptasuite\testunzip\configuration.aptasuite
Reading configuration from file.
Creating Database
Instantiating MapDBAptamerPool
Created new file C:\Users\Yoshi\Dropbox\Stanford\Aptasuite\testunzip\pooldata\data0000.mapdb
Created new bounds file C:\Users\Yoshi\Dropbox\Stanford\Aptasuite\testunzip\pooldata\bounds_data0000.mapdb
Created new inverse file C:\Users\Yoshi\Dropbox\Stanford\Aptasuite\testunzip\pooldata\data_inverse.mapdb
AptamerPool instantiation took 62.934 seconds
Processing selection cycle r0
drivenbyentropy
commented
3 years ago Closing this, please feel free to reopen if this is still an issue.
Hello,
I am using windows 10 and AptaSuite v0.9.3. When I attempt to run the program, I am able to parse the HTS file (in unzipped fastq format). However, The aptamer pool tab keeps calculating forever (I have had it run multiple times for at least 2-3 days).
I launched the gui through command line and have posted some of the log. Do you happen to have any suggestions?
Cheers, Alex