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drivenbyentropy / aptasuite

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
https://drivenbyentropy.github.io/
GNU General Public License v3.0
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Export cycles without constant region from command line #86

Closed dgranas closed 4 years ago

dgranas commented 4 years ago

Hi, I saw on the GUI version there is an option to export sequences without the 5' and 3' primers - is there a way to also do this with -export cycles on the command line version?

Bioanalytica commented 4 years ago

Yes, the following has to specified in the configuration file:

Export.IncludePrimerRegions = False

Otherwise the default is to include primers, compress, and format as fastq.