Dear Professor Rizopoulos,
I have some doubts regarding the interpretation of exp(Assoct) in joint model.
In your book "Joint models for longitudinal and time-to-event data _ with applications in R", section 4.1.1 The Survival Submodel mentions:
h0(t) exp{γ⊤wi + αmi(t)}
exp(α) denotes the relative increase in the risk for an event at time t that results from one unit increase in yi(t) at the same time point. `However, here mi(t) is defined as:
yi(t) = mi(t) + εi(t),
mi(t) = x ⊤ i (t)β + z ⊤ i (t)bi
the mi(t) was linear.
Because my y is non-linear, I used bs(time,3) to fit the nonlinear process of y.
Below, I've included the code and results:
fitLME <- lme(y~ bs(chartday,3), random = ~ 1+chartday|subject_id,
data = data_for_lme)
fitSURV <- coxph(Surv(time, status) ~ apsiii+charlson_pasthistory_charlson_comorbidity_index,
data = data_for_cox, x = TRUE , model = TRUE)
fitJOINT <- jointModel(fitLME, fitSURV, timeVar = "chartday")
summary(fitJOINT)
Call:
jointModel(lmeObject = fitLME, survObject = fitSURV, timeVar = "chartday")
Data Descriptives:
Longitudinal Process Event Process
Number of Observations: 74816 Number of Events: 1391 (20.7%)
Number of Groups: 6713
Joint Model Summary:
Longitudinal Process: Linear mixed-effects model
Event Process: Weibull relative risk model
Parameterization: Time-dependent
log.Lik AIC BIC
-37348.72 74723.43 74811.99
Variance Components:
StdDev Corr
(Intercept) 0.6976 (Intr)
chartday 0.0807 -0.2029
Residual 0.2904
Coefficients:
Longitudinal Process
Value Std.Err z-value p-value
(Intercept) 5.0622 0.0088 572.5697 <0.0001
bs(chartday, 3)1 -0.6039 0.0163 -36.9510 <0.0001
bs(chartday, 3)2 1.5291 0.0348 43.9721 <0.0001
bs(chartday, 3)3 0.1008 0.0443 2.2755 0.0229
Event Process
Value Std.Err z-value p-value
(Intercept) -5.1218 0.1958 -26.1581 <0.0001
apsiii 0.0210 0.0009 24.0735 <0.0001
charlson_pasthistory_charlson_comorbidity_index 0.1153 0.0089 12.9207 <0.0001
Assoct -0.3082 0.0285 -10.8297 <0.0001
log(shape) 0.0302 0.0234 1.2906 0.1968
Scale: 1.0307
Integration:
method: (pseudo) adaptive Gauss-Hermite
quadrature points: 3
Optimization:
Convergence: 0
Can I still interpret exp(Assoct) as denoting the relative increase in the risk for an event at time t that results from one unit increase in yi(t) at the same time point at this point? Can exp(Assoct) be interpreted as this no matter how mi(t) is fitted (bs(), ns(), poly()...)?
Thank you very much!
Dear Professor Rizopoulos, I have some doubts regarding the interpretation of exp(Assoct) in joint model. In your book "Joint models for longitudinal and time-to-event data _ with applications in R", section 4.1.1 The Survival Submodel mentions:
the mi(t) was linear.
Because my y is non-linear, I used
bs(time,3)
to fit the nonlinear process of y. Below, I've included the code and results:Can I still interpret exp(Assoct) as denoting the relative increase in the risk for an event at time t that results from one unit increase in yi(t) at the same time point at this point? Can exp(Assoct) be interpreted as this no matter how mi(t) is fitted (bs(), ns(), poly()...)? Thank you very much!
Best, Qian