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drorlab / gvp-pytorch

Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
https://openreview.net/forum?id=1YLJDvSx6J4
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Anyone knows how to convert protein pdb file to json? #12

Open Tizzzzy opened 2 months ago

Tizzzzy commented 2 months ago

Hi I am new to protein domain. Does anyone knows how to convert protein pdb file to json format like this:

[
    {
        "name": "NAME"
        "seq": "TQDCSFQHSP...",
        "coords": [[[74.46, 58.25, -21.65],...],...]
    }
    ...
]