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drostlab / orthologr

Genome wide orthology inference and dNdS estimation
https://drostlab.github.io/orthologr/
GNU General Public License v2.0
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Ensembl gff does not work #28

Open alexpmagalhaes opened 3 years ago

alexpmagalhaes commented 3 years ago

I was trying to get the longest isoform from ensemble genomesbut the function is exiting with an error

Error: Gene_ID or Peptide_IDs between the gtf file and the headers of the fasta file did not match! Please make sure that the 'transcript_id' column in the gtf file matches the IDs given in the headers of the fasta file.

I have a feeling that the function only works for features from refseq. Is there an easy way to fix this?

HajkD commented 3 years ago

Hi,

Would it be possible to post a concrete example code. This will make it much easier for me to help.

Cheers, Hajk