drpowell / degust

An interactive web-tool for RNA-seq analysis
http://degust.erc.monash.edu/
GNU General Public License v3.0
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CSV counts upload automatic condition and replicate detection #124

Open calizilla opened 2 months ago

calizilla commented 2 months ago

It would be great to automate detection of the 'Condition name' and 'Replicates' if the uploaded CSV is formatted according to a certain specification eg " as per the example CSV on the upload page. This could save a lot of time for datasets with many samples.

drpowell commented 2 months ago

Thanks for the suggestion, but I doubt that I will add this anytime soon, but I do welcome PRs

Alternatively, there is a feature to convert column names to something more readable using a regex. Or, you can use the API to programmatically perform the configuration yours.

Cheers,