drprojects
commented
1 year ago Hi @altaykacan,
Sorry to hear you are having installation issues, those can be tricky. To give you a little explanation of why, this project relies on a modified frozen version of torch-points3d, which in turn relies on torch-geometric==1.6.3. Unfortunately, more recent torch-geometric versions are not backward-compatible and break some parts of torch-points3d. The main developpers of TP3D know this but have not had the time to work on it. End of the line: we are stuck with using torch-geometric==1.6.3, which in turn limits the torch and CUDA versions we can use.
I built the install.sh script so as to facilitate the installation by searching your CUDA version and installing the proper torch-geometric dependencies, but it is certainly not bullet-proof !
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How could we adopt the install.sh script to support newer CUDA versions and GPUs?
You will have to make sure that your torch, torch-geometric and CUDA versions are compatible and install torch and torch-geometric from 'manually-selected' wheels. For starters, you must use torch-geometric==1.6.3 and torch>=1.7.1 to avoid any other problem. This limits your options. Have a look at https://pytorch-geometric.com/whl to find which CUDA version the torch-geometric dependencies let you use for which torch version. For example, for torch-1.7.1, you can use CUDA 9.2, CUDA 10.1, CUDA 10.2 and CUDA 11.0. If you absolutely need to use other CUDA versions, you can try to install a different torch version and the appropriate torch-geometric dependencies. I have not tested the code with torch versions above torch==1.7.1, you might be able to do it but I can't vouch for it ;)
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Is there an alternative installation method to create the conda environment?
Nope, the installation is sensitive because of the torch-points3d-torch-geometric limbo explained above. It would be possible to build this project outside of torch-points3d and hence use the most recent torch-geometric and torch versions. But this would require time I do not have...
error_1.txt
I can't relly tell what is happening apart from what the log says: the install has downgraded your urllib3 from 1.26 to 1.25 at some points and it makes sentry-sdk unhappy. I checked on my machines, I have urllib3==1.25.10 and sentry-sdk==0.20.2 installed, which seems (not sure) to be a dependency of pathtools==0.1.2. But I can't tell which library depends on pathtools. If you run install.sh line by line, you will find this out. In which case you can manually install the same version as me for the problematic package.
To help you, here are my specs:
... on a CUDA-11.4 machine
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2021 NVIDIA Corporation
Built on Wed_Jun__2_19:15:15_PDT_2021
Cuda compilation tools, release 11.4, V11.4.48
Build cuda_11.4.r11.4/compiler.30033411_0Package Version
----------------------------- -------------------
absl-py 0.11.0
antlr4-python3-runtime 4.8
argon2-cffi 20.1.0
ase 3.21.1
async-generator 1.10
attrs 20.2.0
backcall 0.2.0
backports.functools-lru-cache 1.6.1
bleach 3.1.5
brotlipy 0.7.0
cached-property 1.5.2
cachetools 4.2.1
certifi 2021.5.30
cffi 1.14.2
chardet 3.0.4
click 7.1.2
cmake 3.18.4.post1
configparser 5.0.1
cryptography 3.1
cycler 0.10.0
decorator 4.4.2
defusedxml 0.6.0
docker-pycreds 0.4.0
entrypoints 0.3
faiss 1.6.5
filelock 3.0.12
gdown 3.12.2
gitdb 4.0.5
GitPython 3.1.13
google-auth 1.26.1
google-auth-oauthlib 0.4.2
googledrivedownloader 0.4
GPUtil 1.4.0
grpcio 1.35.0
h5py 3.1.0
hydra-core 1.1.0
idna 2.10
imageio 2.9.0
importlib-metadata 1.7.0
importlib-resources 5.1.0
ipykernel 5.3.4
ipython 7.18.1
ipython-genutils 0.2.0
ipywidgets 7.5.1
isodate 0.6.0
jedi 0.15.2
Jinja2 2.11.2
joblib 1.0.1
json5 0.9.4
jsonpatch 1.28
jsonpointer 2.0
jsonschema 3.2.0
jupyter-client 6.1.7
jupyter-core 4.6.3
jupyterlab 2.2.6
jupyterlab-pygments 0.1.1
jupyterlab-server 1.2.0
kiwisolver 1.3.1
llvmlite 0.35.0
Markdown 3.3.3
MarkupSafe 1.1.1
matplotlib 3.3.4
MinkowskiEngine 0.5.1
mistune 0.8.4
mit-semseg 1.0.0
mkl-fft 1.3.0
mkl-random 1.1.1
mkl-service 2.3.0
nb-conda-kernels 2.2.4
nbclient 0.5.0
nbconvert 6.0.1
nbformat 5.0.7
nest-asyncio 1.4.0
networkx 2.5
notebook 6.1.4
numba 0.52.0
numpy 1.20.1
oauthlib 3.1.0
omegaconf 2.1.0
opencv-python 4.5.2.54
packaging 20.4
pandas 1.2.2
pandocfilters 1.4.2
parso 0.5.2
pathtools 0.1.2
pexpect 4.8.0
pickleshare 0.7.5
Pillow 8.1.0
pip 20.2.2
plotly 4.14.3
plyfile 0.7.3
prometheus-client 0.8.0
promise 2.3
prompt-toolkit 3.0.7
protobuf 3.14.0
psutil 5.8.0
ptyprocess 0.6.0
pyasn1 0.4.8
pyasn1-modules 0.2.8
pycparser 2.20
Pygments 2.6.1
pykeops 1.4.2
pyOpenSSL 19.1.0
pyparsing 2.4.7
pypng 0.0.21
pyrsistent 0.17.2
PySocks 1.7.1
python-dateutil 2.8.1
python-louvain 0.15
pytorch-metric-learning 0.9.96
pytz 2021.1
PyYAML 5.4.1
pyzmq 19.0.2
rdflib 5.0.0
requests 2.24.0
requests-oauthlib 1.3.0
retrying 1.3.3
rsa 4.7.1
scikit-learn 0.24.1
scipy 1.6.0
seaborn 0.11.1
Send2Trash 1.5.0
sentry-sdk 0.20.2
setuptools 49.6.0.post20200814
shortuuid 1.0.1
six 1.15.0
smmap 3.0.5
subprocess32 3.5.4
tensorboard 2.4.1
tensorboard-plugin-wit 1.8.0
terminado 0.8.3
testpath 0.4.4
threadpoolctl 2.1.0
torch 1.7.1+cu110
torch-cluster 1.5.8
torch-geometric 1.6.3
torch-points-kernels 0.6.10
torch-scatter 2.0.8
torch-sparse 0.6.8
torchfile 0.1.0
torchnet 0.0.4
torchsparse 1.1.0
torchvision 0.8.2+cu110
tornado 6.0.4
tqdm 4.59.0
traitlets 5.0.4
typing-extensions 3.7.4.3
urllib3 1.25.10
visdom 0.1.8.9
wandb 0.10.19
wcwidth 0.2.5
webencodings 0.5.1
websocket-client 0.57.0
Werkzeug 1.0.1
wheel 0.35.1
widgetsnbextension 3.5.1
yacs 0.1.8
zipp 3.1.0... on a CUDA-10.2 machine
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2019 NVIDIA Corporation
Built on Wed_Oct_23_19:24:38_PDT_2019
Cuda compilation tools, release 10.2, V10.2.89Package Version
----------------------------- -------------------
absl-py 0.9.0
alabaster 0.7.12
apex 0.1
appdirs 1.4.3
ascii-graph 1.5.1
ase 3.21.1
attrs 19.3.0
audioread 2.1.8
Babel 2.8.0
backcall 0.2.0
beautifulsoup4 4.9.3
bleach 3.1.3
boto3 1.12.28
botocore 1.15.28
brotlipy 0.7.0
cachetools 4.0.0
certifi 2020.12.5
cffi 1.14.5
chardet 4.0.0
chart-studio 1.1.0
click 7.1.1
codecov 2.0.22
colorama 0.4.4
conda 4.9.2
conda-build 3.18.11
conda-package-handling 1.7.2
configparser 5.0.1
coverage 5.0.4
cryptography 3.4.6
cycler 0.10.0
cymem 2.0.5
Cython 0.28.4
cytoolz 0.9.0.1
dataclasses 0.8
DataProperty 0.46.4
decorator 4.4.2
defusedxml 0.6.0
dill 0.2.9
docker-pycreds 0.4.0
docutils 0.15.2
entrypoints 0.3
filelock 3.0.12
flake8 3.7.9
Flask 1.1.1
future 0.18.2
GDAL 2.2.3
gdown 3.12.2
gitdb 4.0.5
GitPython 3.1.13
glob2 0.7
google-auth 1.11.3
google-auth-oauthlib 0.4.1
googledrivedownloader 0.4
gql 0.2.0
graphql-core 1.1
grpcio 1.27.2
gviz-api 1.9.0
h5py 2.10.0
html2text 2020.1.16
hydra-core 0.11.3
hypothesis 4.50.8
idna 2.10
imageio 2.8.0
imagesize 1.2.0
importlib-metadata 1.5.0
inflect 4.1.0
ipdb 0.13.2
ipykernel 5.2.0
ipympl 0.6.3
ipython 7.12.0
ipython-genutils 0.2.0
ipywidgets 7.6.3
isodate 0.6.0
itsdangerous 1.1.0
jedi 0.18.0
Jinja2 2.11.3
jmespath 0.9.5
joblib 0.14.1
json5 0.9.3
jsonpatch 1.28
jsonpointer 2.0
jsonschema 3.2.0
jupyter-client 6.1.0
jupyter-core 4.6.3
jupyter-tensorboard 0.2.0
jupyterlab 2.2.9
jupyterlab-git 0.23.3
jupyterlab-server 1.2.0
jupyterlab-widgets 1.0.0
jupytext 1.10.0
kaleido 0.1.0
kiwisolver 1.1.0
libarchive-c 2.9
librosa 0.6.3
llvmlite 0.32.1
lmdb 0.98
Mako 1.1.2
Markdown 3.2.1
markdown-it-py 0.6.2
MarkupSafe 1.1.1
maskrcnn-benchmark 0.1
matplotlib 3.3.4
mbstrdecoder 0.8.4
mccabe 0.6.1
mdit-py-plugins 0.2.5
MinkowskiEngine 0.5.1
mistune 0.8.4
mlperf-compliance 0.0.10
mock 4.0.1
more-itertools 8.2.0
msgfy 0.0.7
msgpack 0.6.1
msgpack-numpy 0.4.3.2
murmurhash 1.0.5
nbconvert 5.6.1
nbdime 2.1.0
nbformat 5.0.4
networkx 2.0
nltk 3.4.5
notebook 6.0.3
numba 0.49.1
numpy 1.19.5
nvidia-dali 0.19.0
nvidia-ml-py3 7.352.0
oauthlib 3.1.0
omegaconf 1.4.1
onnx 1.6.0
open3d 0.10.0.0
packaging 20.3
pandas 1.1.5
pandocfilters 1.4.2
param 1.10.1
parso 0.8.1
pathvalidate 2.2.1
pexpect 4.8.0
pickleshare 0.7.5
Pillow 8.1.0
Pillow-SIMD 5.3.0.post1
pip 21.0.1
pkginfo 1.7.0
plac 0.9.6
plotly 4.14.3
plotly-geo 1.0.0
pluggy 0.13.1
plyfile 0.7.3
preshed 2.0.1
progressbar 2.5
prometheus-client 0.7.1
promise 2.3
prompt-toolkit 3.0.8
protobuf 3.11.3
psutil 5.8.0
ptyprocess 0.7.0
py 1.8.1
pyasn1 0.4.8
pyasn1-modules 0.2.8
pybind11 2.4.3
pycocotools 2.0+nv0.4.0
pycodestyle 2.5.0
pycosat 0.6.3
pycparser 2.20
pycuda 2019.1.2
pydot 1.4.1
pyflakes 2.1.1
Pygments 2.8.1
pyOpenSSL 20.0.1
pyparsing 2.4.6
pyrsistent 0.16.0
PySocks 1.7.1
pytablewriter 0.50.0
pytest 5.4.1
pytest-cov 2.8.1
pytest-pythonpath 0.7.3
python-dateutil 2.8.1
python-hostlist 1.20
python-louvain 0.15
python-nvd3 0.15.0
python-slugify 4.0.0
pytools 2020.1
pytorch-metric-learning 0.9.97.dev2
pytorch-transformers 1.1.0
pytz 2021.1
pyviz-comms 2.0.1
PyWavelets 1.1.1
PyYAML 5.3
pyzmq 19.0.0
rdflib 5.0.0
regex 2020.11.13
requests 2.25.1
requests-oauthlib 1.3.0
resampy 0.2.2
retrying 1.3.3
revtok 0.0.3
rsa 4.0
ruamel-yaml 0.15.87
s3transfer 0.3.3
sacrebleu 1.2.10
sacremoses 0.0.35
scikit-image 0.16.2
scikit-learn 0.24.1
scipy 1.5.4
Send2Trash 1.5.0
sentencepiece 0.1.85
sentry-sdk 0.20.2
setuptools 52.0.0.post20210125
shortuuid 1.0.1
six 1.15.0
sk-video 1.1.10
smmap 3.0.5
snowballstemmer 2.0.0
SoundFile 0.10.3.post1
soupsieve 2.2
sox 1.3.7
spacy 2.0.16
Sphinx 2.4.4
sphinx-rtd-theme 0.4.3
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 1.0.3
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.4
SSD 0.1
subprocess32 3.5.4
subword-nmt 0.3.3
tabledata 1.1.0
tabulate 0.8.7
tensorboard 2.2.1
tensorboard-plugin-profile 2.4.0
tensorboard-plugin-wit 1.8.0
tensorrt 7.0.0.11
terminado 0.8.3
testpath 0.4.4
text-unidecode 1.3
thinc 6.12.1
threadpoolctl 2.1.0
tifffile 2020.9.3
toml 0.10.0
toolz 0.11.1
torch 1.7.1
torch-cluster 1.5.8
torch-geometric 1.6.3
torch-points-kernels 0.6.10
torch-points3d 1.2.0
torch-scatter 2.0.5
torch-sparse 0.6.8
torchfile 0.1.0
torchnet 0.0.4
torchsparse 1.1.0
torchtext 0.4.0
torchvision 0.8.2
tornado 6.0.4
tqdm 4.59.0
traitlets 4.3.3
typepy 0.6.6
typing 3.7.4.1
typing-extensions 3.7.4.1
ujson 4.0.2
Unidecode 1.1.1
urllib3 1.26.3
visdom 0.1.8.9
wandb 0.8.36
watchdog 2.0.0
wcwidth 0.2.5
webencodings 0.5.1
websocket-client 0.57.0
Werkzeug 1.0.0
wheel 0.36.2
widgetsnbextension 3.5.1
wrapt 1.10.11
yacs 0.1.6
zipp 3.1.0error_2.txt
MinkowskiEngine is actually not essential to this project, you can skip this install, it should be fine. Let me know if this causes trouble later on.
error_3.txt
This error seems related to jupyter-dash installation (I am not 100% from the logs). This package is useful for using plotly in jupyter. If this part of the install.sh does not setup properly, please refer to: https://plotly.com/python/getting-started/#jupyterlab-support.
Hope this helps !
altaykacan
Hey @drprojects , thank you for making the repo available and the extensive instructions! However, I ran into a lot problems while trying to setup the environment and would be grateful if you could help out.
I was trying to install based on the
install.shscript that is provided and couldn't figure out what to do after days of trying. As far as I can tell the problem is due to the installation of Minkowski Engine and the GPU I'm using.Here's the system and
GPU information I've been working with:
System: Ubuntu 20.04.5 LTS
GPU & CUDA: Model: NVIDIA GeForce RTX 3080 nvcc path:
/usr/local/cuda-11.4/bin/nvccnvcc version:I've tried using multiple CUDA versions (11.4 and 11.6) and still couldn't get the installation script to work. As far as I understand MinkowskiEngine 0.4 doesn't work with newer GPUs so in
install.shI removed the version specification for it (i.e.pip install -U MinkowskiEngine --install-option="--blas=openblas" -v --no-deps). It also resulted in similar errors when I used the default version in the script.My main questions would be:
install.shscript to support newer CUDA versions and GPUs?Beginning of the installation & pip versioning error with `urllib: error_1.txt
Minkowski Engine compilation problems: error_2.txt
Errors with Jupyter, these only happen at the end and probably are due to the earlier errors: error_3.txt
Thank you in advance for your help!